Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- plasma membrane 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr5P02480_001 | |
| GSMUA_Achr7P01120_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G54490.1 | GSMUA_Achr5P02480_001 | AT2G34650.1 | 12857841 |
| AT5G54490.1 | GSMUA_Achr7P01120_001 | AT2G34650.1 | 12857841 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr7P27110_001 | Banana | cytosol | 68.14 | 66.38 |
| GSMUA_Achr8P01460_001 | Banana | cytosol | 63.72 | 64.29 |
| KXG33526 | Sorghum | cytosol | 57.52 | 63.73 |
| Os01t0783700-01 | Rice | cytosol | 61.95 | 63.06 |
| GSMUA_Achr3P23000_001 | Banana | cytosol | 58.41 | 62.26 |
| TraesCS3B01G351500.1 | Wheat | cytosol | 60.18 | 61.26 |
| TraesCS3A01G315400.1 | Wheat | cytosol | 60.18 | 61.26 |
| TraesCS3D01G316100.1 | Wheat | cytosol | 59.29 | 60.36 |
| PGSC0003DMT400067274 | Potato | cytosol | 61.95 | 58.82 |
| VIT_12s0134g00240.t01 | Wine grape | cytosol | 60.18 | 58.62 |
| Solyc07g053050.1.1 | Tomato | cytosol | 60.18 | 58.62 |
| KXG25648 | Sorghum | cytosol | 56.64 | 58.18 |
| PGSC0003DMT400064403 | Potato | cytosol | 60.18 | 58.12 |
| VIT_19s0014g03970.t01 | Wine grape | cytosol | 54.87 | 57.41 |
| Zm00001d043258_P001 | Maize | cytosol | 46.9 | 56.99 |
| VIT_00s0347g00040.t01 | Wine grape | cytosol | 56.64 | 56.64 |
| Zm00001d031419_P001 | Maize | cytosol | 54.87 | 56.36 |
| PGSC0003DMT400057519 | Potato | cytosol | 56.64 | 55.65 |
| KRH27149 | Soybean | cytosol | 56.64 | 55.65 |
| KRH22182 | Soybean | cytosol | 56.64 | 55.17 |
| Solyc02g079520.1.1 | Tomato | nucleus | 55.75 | 54.78 |
| VIT_02s0012g00640.t01 | Wine grape | cytosol | 53.98 | 54.46 |
| PGSC0003DMT400064404 | Potato | cytosol | 58.41 | 54.1 |
| VIT_02s0012g00650.t01 | Wine grape | cytosol | 53.1 | 54.05 |
| Solyc07g063690.1.1 | Tomato | cytosol | 53.98 | 53.98 |
| PGSC0003DMT400049542 | Potato | cytosol | 53.98 | 53.98 |
| Solyc10g006660.2.1 | Tomato | cytosol | 61.06 | 53.49 |
| KRH55440 | Soybean | cytosol | 47.79 | 53.47 |
| GSMUA_Achr5P26360_001 | Banana | cytosol | 55.75 | 53.39 |
| Solyc10g006700.1.1 | Tomato | cytosol | 57.52 | 53.28 |
| KRH25447 | Soybean | cytosol | 59.29 | 53.17 |
| KRH55477 | Soybean | cytosol | 54.87 | 52.1 |
| KRH21601 | Soybean | cytosol | 52.21 | 51.75 |
| KRH10720 | Soybean | cytosol | 52.21 | 51.75 |
| KRH22491 | Soybean | cytosol | 55.75 | 51.64 |
| Solyc02g079720.1.1 | Tomato | cytosol | 48.67 | 51.4 |
| PGSC0003DMT400012996 | Potato | cytosol | 52.21 | 51.3 |
| Solyc03g006710.1.1 | Tomato | cytosol | 52.21 | 51.3 |
| KRH25972 | Soybean | cytosol | 53.98 | 51.26 |
| AT5G54490.1 | Thale cress | cytosol | 56.64 | 50.39 |
| KRH26856 | Soybean | cytosol | 53.98 | 50.0 |
| CDY48640 | Canola | cytosol | 57.52 | 49.62 |
| Bra022723.1-P | Field mustard | cytosol | 56.64 | 48.85 |
| KRH26016 | Soybean | cytosol | 47.79 | 48.65 |
| HORVU3Hr1G077070.1 | Barley | cytosol | 56.64 | 48.48 |
| AT4G27280.1 | Thale cress | cytosol | 55.75 | 48.46 |
| CDY28767 | Canola | cytosol | 55.75 | 48.09 |
| CDY29293 | Canola | cytosol | 53.98 | 48.03 |
| PGSC0003DMT400064349 | Potato | cytosol | 49.56 | 47.46 |
| VIT_02s0012g00660.t01 | Wine grape | cytosol | 49.56 | 46.67 |
| CDY42456 | Canola | cytosol | 53.98 | 46.56 |
| CDY61745 | Canola | cytosol | 53.98 | 46.56 |
| Bra002984.1-P | Field mustard | cytosol | 53.98 | 46.56 |
| PGSC0003DMT400036057 | Potato | cytosol | 46.9 | 46.09 |
| GSMUA_Achr1P03980_001 | Banana | cytosol | 50.44 | 45.97 |
| VIT_19s0014g04650.t01 | Wine grape | cytosol | 60.18 | 45.33 |
| KRH27151 | Soybean | cytosol | 48.67 | 45.08 |
| KRH22173 | Soybean | cytosol | 47.79 | 43.55 |
| Solyc10g006740.2.1 | Tomato | extracellular | 46.9 | 36.3 |
| CDX89262 | Canola | cytosol, peroxisome, plastid | 54.87 | 22.79 |
| Bra026364.1-P | Field mustard | cytosol | 53.1 | 20.55 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr9P30020_001 | EnsemblPlants:GSMUA_Achr9T30020_001 | EnsemblPlantsGene:GSMUA_Achr9G30020_001 | Gene3D:1.10.238.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005509 | InterPro:EF-hand-dom_pair | InterPro:EF_Hand_1_Ca_BS | InterPro:EF_hand_dom | InterPro:IPR002048 | PANTHER:PTHR44180 |
| PANTHER:PTHR44180:SF6 | PFAM:PF13833 | PFscan:PS50222 | ScanProsite:PS00018 | SUPFAM:SSF47473 | UniParc:UPI0002948C9E |
| UniProt:M0U4Q9 | MapMan:35.1 | : | : | : | : |
Description
EF hand family protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr9G30020_001]
Coordinates
chr9:+:33468903..33469244
Molecular Weight (calculated)
12295.0 Da
IEP (calculated)
4.034
GRAVY (calculated)
0.073
Length
113 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAARDSMGF QDFLPRMAER LGAEGLMEEL CKGFKLLMDP ERGVITSESL RRNVAALGLV GLGDDELMGM VREGDLNGDG VLDQMEFCVL MVRLSPELIE
101: GSLPDVFNSS PTL
101: GSLPDVFNSS PTL
001: MASPKSSTRP NQENQEPQFQ DFFPTMAGKL GGEGLIEEIC KGFELLMDKD KGVITFESLR RNASTVLGLG DLTDDDVRYM INEGDFDRDG ALNQMEFCVL
101: MFRLSPELME ASRCVVTEVI EEEFYRH
101: MFRLSPELME ASRCVVTEVI EEEFYRH
Arabidopsis Description
PBP1PBP1 [Source:UniProtKB/TrEMBL;Acc:A0A178URF6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.