Factsheet for VIT_02s0012g00640.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_02s0012g00650.t01	Wine grape	cytosol	86.61	87.39
VIT_19s0014g03970.t01	Wine grape	cytosol	81.25	84.26
VIT_02s0012g00660.t01	Wine grape	cytosol	80.36	75.0
KRH55440	Soybean	cytosol	60.71	67.33
PGSC0003DMT400049542	Potato	cytosol	66.96	66.37
Solyc07g063690.1.1	Tomato	cytosol	66.07	65.49
KRH26016	Soybean	cytosol	60.71	61.26
VIT_00s0347g00040.t01	Wine grape	cytosol	61.61	61.06
VIT_12s0134g00240.t01	Wine grape	cytosol	58.93	56.9
PGSC0003DMT400064349	Potato	cytosol	59.82	56.78
GSMUA_Achr3P23000_001	Banana	cytosol	52.68	55.66
TraesCS3B01G351500.1	Wheat	cytosol	54.46	54.95
TraesCS3D01G316100.1	Wheat	cytosol	54.46	54.95
GSMUA_Achr7P27110_001	Banana	cytosol	56.25	54.31
TraesCS3A01G315400.1	Wheat	cytosol	53.57	54.05
GSMUA_Achr9P30020_001	Banana	cytosol	54.46	53.98
KRH27151	Soybean	cytosol	58.04	53.28
Os01t0783700-01	Rice	cytosol	52.68	53.15
KRH22173	Soybean	cytosol	58.04	52.42
KXG33526	Sorghum	cytosol	47.32	51.96
Zm00001d043258_P001	Maize	cytosol	42.86	51.61
GSMUA_Achr5P26360_001	Banana	cytosol	53.57	50.85
TraesCS7A01G450400.1	Wheat	cytosol	56.25	50.4
Zm00001d031419_P001	Maize	cytosol	49.11	50.0
KXG25648	Sorghum	cytosol	49.11	50.0
Os06t0683400-02	Rice	cytosol	55.36	49.6
TraesCS7B01G350200.1	Wheat	cytosol	56.25	48.84
GSMUA_Achr8P01460_001	Banana	cytosol	48.21	48.21
TraesCS7D01G439800.1	Wheat	cytosol	56.25	47.01
HORVU3Hr1G077070.1	Barley	cytosol	53.57	45.45
Zm00001d014491_P001	Maize	cytosol	53.57	45.45
EER88832	Sorghum	cytosol	52.68	45.38
VIT_15s0046g00070.t01	Wine grape	cytosol	50.89	44.88
Solyc10g006740.2.1	Tomato	extracellular	58.04	44.52
VIT_19s0014g04650.t01	Wine grape	cytosol	57.14	42.67
HORVU7Hr1G101740.2	Barley	cytosol, plastid	41.07	28.57

Protein Annotations

Gene3D:1.10.238.10	EntrezGene:100260800	wikigene:100260800	MapMan:35.1	EMBL:AM458116	ProteinID:CAN60037
ProteinID:CAN60037.1	ProteinID:CCB57934	ProteinID:CCB57934.1	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom
UniProt:F6HTC4	EMBL:FN596247	GO:GO:0003674	GO:GO:0005488	GO:GO:0005509	InterPro:IPR002048
EntrezGene:LOC100260800	wikigene:LOC100260800	PFAM:PF13833	ScanProsite:PS00018	PFscan:PS50222	PANTHER:PTHR23050
PANTHER:PTHR23050:SF222	SUPFAM:SSF47473	UniParc:UPI00021082EC	ArrayExpress:VIT_02s0012g00640	EnsemblPlantsGene:VIT_02s0012g00640	EnsemblPlants:VIT_02s0012g00640.t01
RefSeq:XP_002279107	RefSeq:XP_002279107.2	:	:	:	:

Description

No Description!

Coordinates

chr2:-:6533563..6534000

Molecular Weight (calculated)

12892.5 Da

IEP (calculated)

3.599

GRAVY (calculated)

-0.176

Length

112 amino acids

Sequence
(BLAST)

001: MEVEGEVLQF EDYFPSMMEG LGAEGFMEEL CQGFHLLMDV EKGLITFESL RRSTWQLGLQ EMGDDELVWM LSEGDLDGDG ALNQTEFCIL MLRLSPGLME
101: GPKQYWMEDM YT

Best Arabidopsis Sequence Match ( AT5G54490.1 )
(BLAST)

001: MASPKSSTRP NQENQEPQFQ DFFPTMAGKL GGEGLIEEIC KGFELLMDKD KGVITFESLR RNASTVLGLG DLTDDDVRYM INEGDFDRDG ALNQMEFCVL
101: MFRLSPELME ASRCVVTEVI EEEFYRH

Arabidopsis Description

PBP1PBP1 [Source:UniProtKB/TrEMBL;Acc:A0A178URF6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.