Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- plasma membrane 2
- mitochondrion 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_10s0003g04320.t01 | |
| VIT_17s0000g07580.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G54490.1 | VIT_10s0003g04320.t01 | AT2G34650.1 | 12857841 |
| AT5G54490.1 | VIT_17s0000g07580.t01 | AT3G48100.1 | 18642946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH27149 | Soybean | cytosol | 58.0 | 75.65 |
| KRH22182 | Soybean | cytosol | 58.0 | 75.0 |
| PGSC0003DMT400064403 | Potato | cytosol | 58.0 | 74.36 |
| KRH25972 | Soybean | cytosol | 58.67 | 73.95 |
| VIT_12s0134g00240.t01 | Wine grape | cytosol | 56.0 | 72.41 |
| KRH55477 | Soybean | cytosol | 56.0 | 70.59 |
| Solyc10g006700.1.1 | Tomato | cytosol | 57.33 | 70.49 |
| PGSC0003DMT400064404 | Potato | cytosol | 57.33 | 70.49 |
| Solyc10g006660.2.1 | Tomato | cytosol | 58.0 | 67.44 |
| VIT_00s0347g00040.t01 | Wine grape | cytosol | 49.33 | 65.49 |
| GSMUA_Achr3P23000_001 | Banana | cytosol | 46.0 | 65.09 |
| TraesCS3A01G315400.1 | Wheat | cytosol | 46.67 | 63.06 |
| Os01t0783700-01 | Rice | cytosol | 46.67 | 63.06 |
| VIT_19s0014g03970.t01 | Wine grape | cytosol | 45.33 | 62.96 |
| GSMUA_Achr7P27110_001 | Banana | cytosol | 48.67 | 62.93 |
| GSMUA_Achr8P01460_001 | Banana | cytosol | 46.67 | 62.5 |
| TraesCS3B01G351500.1 | Wheat | cytosol | 46.0 | 62.16 |
| KXG33526 | Sorghum | cytosol | 42.0 | 61.76 |
| TraesCS3D01G316100.1 | Wheat | cytosol | 45.33 | 61.26 |
| GSMUA_Achr9P30020_001 | Banana | cytosol | 45.33 | 60.18 |
| AT5G54490.1 | Thale cress | cytosol | 50.67 | 59.84 |
| KXG25648 | Sorghum | cytosol | 43.33 | 59.09 |
| CDY29293 | Canola | cytosol | 49.33 | 58.27 |
| Zm00001d031419_P001 | Maize | cytosol | 42.67 | 58.18 |
| VIT_02s0012g00650.t01 | Wine grape | cytosol | 42.67 | 57.66 |
| GSMUA_Achr5P26360_001 | Banana | cytosol | 45.33 | 57.63 |
| Bra002984.1-P | Field mustard | cytosol | 50.0 | 57.25 |
| Bra022723.1-P | Field mustard | cytosol | 50.0 | 57.25 |
| CDY61745 | Canola | cytosol | 50.0 | 57.25 |
| CDY48640 | Canola | cytosol | 50.0 | 57.25 |
| VIT_02s0012g00640.t01 | Wine grape | cytosol | 42.67 | 57.14 |
| Zm00001d043258_P001 | Maize | cytosol | 35.33 | 56.99 |
| AT4G27280.1 | Thale cress | cytosol | 49.33 | 56.92 |
| CDY28767 | Canola | cytosol | 49.33 | 56.49 |
| CDY42456 | Canola | cytosol | 49.33 | 56.49 |
| VIT_02s0012g00660.t01 | Wine grape | cytosol | 44.67 | 55.83 |
| TraesCS7A01G450400.1 | Wheat | cytosol | 44.0 | 52.8 |
| Os06t0683400-02 | Rice | cytosol | 44.0 | 52.8 |
| TraesCS7B01G350200.1 | Wheat | cytosol | 44.67 | 51.94 |
| EER88832 | Sorghum | cytosol | 43.33 | 50.0 |
| HORVU3Hr1G077070.1 | Barley | cytosol | 44.0 | 50.0 |
| TraesCS7D01G439800.1 | Wheat | cytosol | 44.0 | 49.25 |
| Zm00001d014491_P001 | Maize | cytosol | 43.33 | 49.24 |
| VIT_15s0046g00070.t01 | Wine grape | cytosol | 40.67 | 48.03 |
| HORVU7Hr1G101740.2 | Barley | cytosol, plastid | 34.67 | 32.3 |
| CDX89262 | Canola | cytosol, peroxisome, plastid | 50.0 | 27.57 |
| Bra026364.1-P | Field mustard | cytosol | 49.33 | 25.34 |
Protein Annotations
| Gene3D:1.10.238.10 | EntrezGene:100267424 | wikigene:100267424 | MapMan:35.1 | EMBL:AM470161 | ProteinID:CAN77257 |
| ProteinID:CAN77257.1 | ProteinID:CCB46448 | ProteinID:CCB46448.1 | InterPro:EF-hand-dom_pair | InterPro:EF_Hand_1_Ca_BS | InterPro:EF_hand_dom |
| UniProt:F6H2G8 | EMBL:FN595229 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005509 | InterPro:IPR002048 |
| EntrezGene:LOC100267424 | wikigene:LOC100267424 | PFAM:PF13833 | ScanProsite:PS00018 | PFscan:PS50222 | PANTHER:PTHR44180 |
| PANTHER:PTHR44180:SF1 | SUPFAM:SSF47473 | UniParc:UPI0002108125 | ArrayExpress:VIT_19s0014g04650 | EnsemblPlantsGene:VIT_19s0014g04650 | EnsemblPlants:VIT_19s0014g04650.t01 |
| RefSeq:XP_002283303 | RefSeq:XP_002283303.1 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr19:+:4955233..4956196
Molecular Weight (calculated)
16892.2 Da
IEP (calculated)
4.114
GRAVY (calculated)
-0.174
Length
150 amino acids
Sequence
(BLAST)
(BLAST)
001: MEVAKKSPTS FLLKTLITFS EIEKQLQASE SANLLLPDPS NFQDFLPLMA HKLGGEGLMS ELCNGFNLLM DSSKGVITFE SLKRNSALLG LEGLSDDDLW
101: SMLREGDFDG DGALNQMEFC VLMFRLSPEL MEESEFWLEE ALQQELKNHH
101: SMLREGDFDG DGALNQMEFC VLMFRLSPEL MEESEFWLEE ALQQELKNHH
001: MASPKSSTRP NQENQEPQFQ DFFPTMAGKL GGEGLIEEIC KGFELLMDKD KGVITFESLR RNASTVLGLG DLTDDDVRYM INEGDFDRDG ALNQMEFCVL
101: MFRLSPELME ASRCVVTEVI EEEFYRH
101: MFRLSPELME ASRCVVTEVI EEEFYRH
Arabidopsis Description
PBP1PBP1 [Source:UniProtKB/TrEMBL;Acc:A0A178URF6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.