Factsheet for VIT_12s0134g00240.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plasma membrane 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g053050.1.1	Tomato	cytosol	73.28	73.28
PGSC0003DMT400067274	Potato	cytosol	73.28	71.43
KRH25447	Soybean	cytosol	76.72	70.63
VIT_00s0347g00040.t01	Wine grape	cytosol	65.52	67.26
KRH26856	Soybean	cytosol	70.69	67.21
GSMUA_Achr3P23000_001	Banana	cytosol	61.21	66.98
TraesCS3A01G315400.1	Wheat	cytosol	63.79	66.67
Os01t0783700-01	Rice	cytosol	62.93	65.77
KRH22491	Soybean	cytosol	68.97	65.57
TraesCS3B01G351500.1	Wheat	cytosol	62.07	64.86
VIT_19s0014g03970.t01	Wine grape	cytosol	60.34	64.81
VIT_02s0012g00650.t01	Wine grape	cytosol	60.34	63.06
TraesCS3D01G316100.1	Wheat	cytosol	60.34	63.06
GSMUA_Achr7P27110_001	Banana	cytosol	62.93	62.93
KXG33526	Sorghum	cytosol	54.31	61.76
Zm00001d043258_P001	Maize	cytosol	49.14	61.29
Solyc02g079720.1.1	Tomato	cytosol	56.03	60.75
GSMUA_Achr9P30020_001	Banana	cytosol	58.62	60.18
GSMUA_Achr5P26360_001	Banana	cytosol	61.21	60.17
Zm00001d031419_P001	Maize	cytosol	56.03	59.09
VIT_02s0012g00640.t01	Wine grape	cytosol	56.9	58.93
KXG25648	Sorghum	cytosol	55.17	58.18
GSMUA_Achr8P01460_001	Banana	cytosol	56.03	58.04
VIT_02s0012g00660.t01	Wine grape	cytosol	59.48	57.5
PGSC0003DMT400036057	Potato	cytosol	56.9	57.39
TraesCS7A01G450400.1	Wheat	cytosol	60.34	56.0
VIT_19s0014g04650.t01	Wine grape	cytosol	72.41	56.0
Os06t0683400-02	Rice	cytosol	60.34	56.0
TraesCS7B01G350200.1	Wheat	cytosol	61.21	55.04
EER88832	Sorghum	cytosol	59.48	53.08
TraesCS7D01G439800.1	Wheat	cytosol	60.34	52.24
HORVU3Hr1G077070.1	Barley	cytosol	58.62	51.52
Zm00001d014491_P001	Maize	cytosol	57.76	50.76
VIT_15s0046g00070.t01	Wine grape	cytosol	52.59	48.03
HORVU7Hr1G101740.2	Barley	cytosol, plastid	43.97	31.68

Protein Annotations

Gene3D:1.10.238.10	EntrezGene:100265313	wikigene:100265313	MapMan:35.1	ProteinID:CCB44734	ProteinID:CCB44734.1
InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	UniProt:F6GXP8	EMBL:FN594966	GO:GO:0003674
GO:GO:0005488	GO:GO:0005509	InterPro:IPR002048	EntrezGene:LOC100265313	wikigene:LOC100265313	PFAM:PF13833
ScanProsite:PS00018	PFscan:PS50222	PANTHER:PTHR44180	PANTHER:PTHR44180:SF1	SMART:SM00054	SUPFAM:SSF47473
TIGR:TC61603	UniParc:UPI00015CA6E1	ArrayExpress:VIT_12s0134g00240	EnsemblPlantsGene:VIT_12s0134g00240	EnsemblPlants:VIT_12s0134g00240.t01	RefSeq:XP_002281878
RefSeq:XP_002281878.1	:	:	:	:	:

Description

No Description!

Coordinates

chr12:-:7768803..7769369

Molecular Weight (calculated)

12993.8 Da

IEP (calculated)

3.937

GRAVY (calculated)

-0.167

Length

116 amino acids

Sequence
(BLAST)

001: MAAPKMGDFE DLLPVMAEKL GGEGLIRELC NGFRLLMDGE KGVITLESLK RNAALLGLQE LRDDELQSML REGDLDGDGA LNQMEFCVLM FRLSPDLMEE
101: SQFWLEQALE EALRDG

Best Arabidopsis Sequence Match ( AT4G27280.1 )
(BLAST)

001: MASPKSPTRP TQQNPQPNFH DFLPTMAGNL GGEGLIGELC NGFELLMDRE KGVITFESLR RNAAAVLGLG DLTDEDVRCM IKEGDFDCDG ALNQMEFCVL
101: MFRLSPDLME ASRCLVTEVI EEEFGFTRRH

Arabidopsis Description

KRP1Calcium-binding protein KRP1 [Source:UniProtKB/Swiss-Prot;Acc:O81831]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.