Factsheet for PGSC0003DMT400036057

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g079720.1.1	Tomato	cytosol	83.48	89.72
PGSC0003DMT400064403	Potato	cytosol	60.0	58.97
VIT_12s0134g00240.t01	Wine grape	cytosol	57.39	56.9
Zm00001d043258_P001	Maize	cytosol	45.22	55.91
KRH26856	Soybean	cytosol	59.13	55.74
PGSC0003DMT400064404	Potato	cytosol	59.13	55.74
KXG33526	Sorghum	cytosol	47.83	53.92
PGSC0003DMT400067274	Potato	cytosol	55.65	53.78
KRH22491	Soybean	cytosol	56.52	53.28
TraesCS3B01G351500.1	Wheat	cytosol	51.3	53.15
GSMUA_Achr7P27110_001	Banana	cytosol	53.04	52.59
TraesCS3A01G315400.1	Wheat	cytosol	50.43	52.25
Zm00001d031419_P001	Maize	cytosol	49.57	51.82
TraesCS3D01G316100.1	Wheat	cytosol	49.57	51.35
KXG25648	Sorghum	cytosol	48.7	50.91
KRH25447	Soybean	cytosol	55.65	50.79
Os01t0783700-01	Rice	cytosol	48.7	50.45
GSMUA_Achr3P23000_001	Banana	cytosol	46.09	50.0
GSMUA_Achr8P01460_001	Banana	cytosol	48.7	50.0
GSMUA_Achr9P30020_001	Banana	cytosol	46.09	46.9
PGSC0003DMT400012996	Potato	cytosol	46.09	46.09
PGSC0003DMT400049542	Potato	cytosol	45.22	46.02
GSMUA_Achr5P26360_001	Banana	cytosol	46.09	44.92
HORVU3Hr1G077070.1	Barley	cytosol	51.3	44.7
PGSC0003DMT400057519	Potato	cytosol	43.48	43.48
PGSC0003DMT400048609	Potato	cytosol	45.22	42.62
Os06t0683400-02	Rice	cytosol	45.22	41.6
TraesCS7A01G450400.1	Wheat	cytosol	45.22	41.6
PGSC0003DMT400064349	Potato	cytosol	42.61	41.53
TraesCS7B01G350200.1	Wheat	cytosol	46.09	41.09
TraesCS7D01G439800.1	Wheat	cytosol	45.22	38.81
EER88832	Sorghum	cytosol	43.48	38.46
Zm00001d014491_P001	Maize	cytosol	43.48	37.88
HORVU7Hr1G101740.2	Barley	cytosol, plastid	33.91	24.22

Protein Annotations

EnsemblPlants:PGSC0003DMT400036057	EnsemblPlantsGene:PGSC0003DMG400013888	Gene3D:1.10.238.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005509
InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	InterPro:IPR002048	PANTHER:PTHR44180	PANTHER:PTHR44180:SF6
PFAM:PF13833	PFscan:PS50222	PGSC:PGSC0003DMG400013888	ScanProsite:PS00018	SUPFAM:SSF47473	UniParc:UPI00029659D4
UniProt:M1B375	MapMan:35.1	:	:	:	:

Description

Avr9/Cf-9 rapidly elicited protein 20 [Source:PGSC_GENE;Acc:PGSC0003DMG400013888]

Coordinates

chr2:+:35403710..35404437

Molecular Weight (calculated)

13047.1 Da

IEP (calculated)

4.385

GRAVY (calculated)

-0.129

Length

115 amino acids

Sequence
(BLAST)

001: MVHLEFQDLL PIMARKLGGE GLINELCKGY QMLMDGEKGV ITIDSLKKNS ELMGLQDFSE EELKNMIREG DMDGDGALDQ IEFCILMFRL SPDLLLVAQQ
101: LLHKADQQQN IVHLK

Best Arabidopsis Sequence Match ( AT5G54490.1 )
(BLAST)

001: MASPKSSTRP NQENQEPQFQ DFFPTMAGKL GGEGLIEEIC KGFELLMDKD KGVITFESLR RNASTVLGLG DLTDDDVRYM INEGDFDRDG ALNQMEFCVL
101: MFRLSPELME ASRCVVTEVI EEEFYRH

Arabidopsis Description

PBP1PBP1 [Source:UniProtKB/TrEMBL;Acc:A0A178URF6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.