Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- plasma membrane 2
- mitochondrion 1
- extracellular 1
- golgi 1
- endoplasmic reticulum 1
- vacuole 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400063187 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G54490.1 | PGSC0003DMT400063187 | AT3G48100.1 | 18642946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc10g006660.2.1 | Tomato | cytosol | 99.15 | 89.92 |
| PGSC0003DMT400064404 | Potato | cytosol | 92.31 | 88.52 |
| KRH27149 | Soybean | cytosol | 70.09 | 71.3 |
| KRH22182 | Soybean | cytosol | 70.09 | 70.69 |
| PGSC0003DMT400067274 | Potato | cytosol | 67.52 | 66.39 |
| KRH25972 | Soybean | cytosol | 66.67 | 65.55 |
| GSMUA_Achr3P23000_001 | Banana | cytosol | 56.41 | 62.26 |
| KRH55477 | Soybean | cytosol | 63.25 | 62.18 |
| KXG33526 | Sorghum | cytosol | 53.85 | 61.76 |
| CDY61745 | Canola | cytosol | 68.38 | 61.07 |
| Bra002984.1-P | Field mustard | cytosol | 68.38 | 61.07 |
| AT4G27280.1 | Thale cress | cytosol | 67.52 | 60.77 |
| AT5G54490.1 | Thale cress | cytosol | 65.81 | 60.63 |
| Os01t0783700-01 | Rice | cytosol | 57.27 | 60.36 |
| TraesCS3A01G315400.1 | Wheat | cytosol | 57.27 | 60.36 |
| CDY48640 | Canola | cytosol | 67.52 | 60.31 |
| CDY42456 | Canola | cytosol | 67.52 | 60.31 |
| CDY28767 | Canola | cytosol | 67.52 | 60.31 |
| Bra022723.1-P | Field mustard | cytosol | 67.52 | 60.31 |
| GSMUA_Achr9P30020_001 | Banana | cytosol | 58.12 | 60.18 |
| PGSC0003DMT400036057 | Potato | cytosol | 58.97 | 60.0 |
| CDY29293 | Canola | cytosol | 64.96 | 59.84 |
| GSMUA_Achr8P01460_001 | Banana | cytosol | 57.27 | 59.82 |
| GSMUA_Achr7P27110_001 | Banana | cytosol | 58.97 | 59.48 |
| TraesCS3B01G351500.1 | Wheat | cytosol | 56.41 | 59.46 |
| TraesCS3D01G316100.1 | Wheat | cytosol | 56.41 | 59.46 |
| VIT_19s0014g04650.t01 | Wine grape | cytosol | 74.36 | 58.0 |
| Zm00001d031419_P001 | Maize | cytosol | 53.85 | 57.27 |
| KXG25648 | Sorghum | cytosol | 53.85 | 57.27 |
| Zm00001d043258_P001 | Maize | cytosol | 45.3 | 56.99 |
| PGSC0003DMT400012996 | Potato | cytosol | 55.56 | 56.52 |
| GSMUA_Achr5P26360_001 | Banana | cytosol | 56.41 | 55.93 |
| TraesCS7A01G450400.1 | Wheat | cytosol | 58.12 | 54.4 |
| PGSC0003DMT400049542 | Potato | cytosol | 51.28 | 53.1 |
| Os06t0683400-02 | Rice | cytosol | 56.41 | 52.8 |
| PGSC0003DMT400057519 | Potato | cytosol | 51.28 | 52.17 |
| TraesCS7B01G350200.1 | Wheat | cytosol | 57.27 | 51.94 |
| EER88832 | Sorghum | cytosol | 57.27 | 51.54 |
| TraesCS7D01G439800.1 | Wheat | cytosol | 58.12 | 50.75 |
| Zm00001d014491_P001 | Maize | cytosol | 56.41 | 50.0 |
| HORVU3Hr1G077070.1 | Barley | cytosol | 54.7 | 48.48 |
| PGSC0003DMT400048609 | Potato | cytosol | 49.57 | 47.54 |
| PGSC0003DMT400064349 | Potato | cytosol | 47.86 | 47.46 |
| HORVU7Hr1G101740.2 | Barley | cytosol, plastid | 45.3 | 32.92 |
| CDX89262 | Canola | cytosol, peroxisome, plastid | 65.81 | 28.31 |
| Bra026364.1-P | Field mustard | cytosol | 64.96 | 26.03 |
Protein Annotations
| Gene3D:1.10.238.10 | EntrezGene:102586119 | MapMan:35.1 | InterPro:EF-hand-dom_pair | InterPro:EF_Hand_1_Ca_BS | InterPro:EF_hand_dom |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005509 | InterPro:IPR002048 | UniProt:M1CCB1 | PFAM:PF13833 |
| EnsemblPlantsGene:PGSC0003DMG400025022 | PGSC:PGSC0003DMG400025022 | EnsemblPlants:PGSC0003DMT400064403 | ScanProsite:PS00018 | PFscan:PS50222 | PANTHER:PTHR44180 |
| PANTHER:PTHR44180:SF1 | SUPFAM:SSF47473 | UniParc:UPI000294A06E | RefSeq:XP_006362922.1 | SEG:seg | : |
Description
Avr9/Cf-9 rapidly elicited protein 20 [Source:PGSC_GENE;Acc:PGSC0003DMG400025022]
Coordinates
chr10:-:1633457..1634676
Molecular Weight (calculated)
13104.8 Da
IEP (calculated)
4.131
GRAVY (calculated)
-0.159
Length
117 amino acids
Sequence
(BLAST)
(BLAST)
001: MATSRKSNFN DFLPLMAEKL GGDGLIGELC KGFQLLMDRD KGVITFESLK KNSALLGLQD LSDDDLKGMV KEGDFDGDGA LNQMEFCVLM FRLSPELMEQ
101: SQFLLDEALH QEFNFSL
101: SQFLLDEALH QEFNFSL
001: MASPKSPTRP TQQNPQPNFH DFLPTMAGNL GGEGLIGELC NGFELLMDRE KGVITFESLR RNAAAVLGLG DLTDEDVRCM IKEGDFDCDG ALNQMEFCVL
101: MFRLSPDLME ASRCLVTEVI EEEFGFTRRH
101: MFRLSPDLME ASRCLVTEVI EEEFGFTRRH
Arabidopsis Description
KRP1Calcium-binding protein KRP1 [Source:UniProtKB/Swiss-Prot;Acc:O81831]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.