Factsheet for PGSC0003DMT400049542

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g063690.1.1	Tomato	cytosol	92.04	92.04
VIT_19s0014g03970.t01	Wine grape	cytosol	69.03	72.22
KRH55440	Soybean	cytosol	62.83	70.3
VIT_02s0012g00640.t01	Wine grape	cytosol	66.37	66.96
VIT_02s0012g00650.t01	Wine grape	cytosol	64.6	65.77
KRH26016	Soybean	cytosol	63.72	64.86
PGSC0003DMT400064349	Potato	cytosol	66.37	63.56
VIT_02s0012g00660.t01	Wine grape	cytosol	63.72	60.0
GSMUA_Achr3P23000_001	Banana	cytosol	53.1	56.6
KRH22173	Soybean	cytosol	61.95	56.45
Os01t0783700-01	Rice	cytosol	53.98	54.95
KRH27151	Soybean	cytosol	59.29	54.92
GSMUA_Achr9P30020_001	Banana	cytosol	53.98	53.98
KXG33526	Sorghum	cytosol	48.67	53.92
Zm00001d043258_P001	Maize	cytosol	44.25	53.76
TraesCS3D01G316100.1	Wheat	cytosol	52.21	53.15
TraesCS3B01G351500.1	Wheat	cytosol	52.21	53.15
TraesCS3A01G315400.1	Wheat	cytosol	52.21	53.15
PGSC0003DMT400012996	Potato	cytosol	53.98	53.04
GSMUA_Achr7P27110_001	Banana	cytosol	53.98	52.59
GSMUA_Achr5P26360_001	Banana	cytosol	54.87	52.54
KXG25648	Sorghum	cytosol	50.44	51.82
PGSC0003DMT400064403	Potato	cytosol	53.1	51.28
TraesCS7A01G450400.1	Wheat	cytosol	56.64	51.2
GSMUA_Achr8P01460_001	Banana	cytosol	50.44	50.89
PGSC0003DMT400057519	Potato	cytosol	51.33	50.43
PGSC0003DMT400067274	Potato	cytosol	53.1	50.42
Os06t0683400-02	Rice	cytosol	55.75	50.4
TraesCS7B01G350200.1	Wheat	cytosol	56.64	49.61
Zm00001d031419_P001	Maize	cytosol	47.79	49.09
PGSC0003DMT400064404	Potato	cytosol	52.21	48.36
TraesCS7D01G439800.1	Wheat	cytosol	56.64	47.76
EER88832	Sorghum	cytosol	53.98	46.92
Zm00001d014491_P001	Maize	cytosol	53.98	46.21
PGSC0003DMT400036057	Potato	cytosol	46.02	45.22
HORVU3Hr1G077070.1	Barley	cytosol	51.33	43.94
PGSC0003DMT400048609	Potato	cytosol	43.36	40.16
HORVU7Hr1G101740.2	Barley	cytosol, plastid	41.59	29.19

Protein Annotations

EnsemblPlants:PGSC0003DMT400049542	EnsemblPlantsGene:PGSC0003DMG400019243	EntrezGene:107063173	Gene3D:1.10.238.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005509	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	InterPro:IPR002048	PANTHER:PTHR44180
PANTHER:PTHR44180:SF2	PFAM:PF13833	PFscan:PS50222	PGSC:PGSC0003DMG400019243	RefSeq:XP_015170166.1	ScanProsite:PS00018
SUPFAM:SSF47473	UniParc:UPI0002965D10	UniProt:M1BNX2	MapMan:35.1	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400019243]

Coordinates

chr7:-:53789533..53790113

Molecular Weight (calculated)

12901.6 Da

IEP (calculated)

3.806

GRAVY (calculated)

-0.081

Length

113 amino acids

Sequence
(BLAST)

001: MEDPYGFEDY FPSMMERLGA EGFMRELCNG FCLLMDVSIG LITYESLKRN TMNLGLNDLR DDELIYMLAE GDLDGDGALN QMEFCILMFR LSPGLMDGSK
101: QYMDDVGLIH FQP

Best Arabidopsis Sequence Match ( AT5G54490.1 )
(BLAST)

001: MASPKSSTRP NQENQEPQFQ DFFPTMAGKL GGEGLIEEIC KGFELLMDKD KGVITFESLR RNASTVLGLG DLTDDDVRYM INEGDFDRDG ALNQMEFCVL
101: MFRLSPELME ASRCVVTEVI EEEFYRH

Arabidopsis Description

PBP1PBP1 [Source:UniProtKB/TrEMBL;Acc:A0A178URF6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.