Factsheet for PGSC0003DMT400064349

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH55440	Soybean	cytosol	58.47	68.32
Solyc10g006740.2.1	Tomato	extracellular	83.9	67.81
PGSC0003DMT400049542	Potato	cytosol	63.56	66.37
VIT_19s0014g03970.t01	Wine grape	cytosol	60.17	65.74
KRH26016	Soybean	cytosol	58.47	62.16
VIT_02s0012g00640.t01	Wine grape	cytosol	56.78	59.82
VIT_02s0012g00650.t01	Wine grape	cytosol	55.08	58.56
GSMUA_Achr3P23000_001	Banana	cytosol	50.85	56.6
Os01t0783700-01	Rice	cytosol	51.69	54.95
KRH22173	Soybean	cytosol	57.63	54.84
VIT_02s0012g00660.t01	Wine grape	cytosol	55.08	54.17
KRH27151	Soybean	cytosol	55.93	54.1
Zm00001d043258_P001	Maize	cytosol	41.53	52.69
GSMUA_Achr5P26360_001	Banana	cytosol	51.69	51.69
PGSC0003DMT400012996	Potato	cytosol	50.0	51.3
PGSC0003DMT400057519	Potato	cytosol	50.0	51.3
KXG33526	Sorghum	cytosol	44.07	50.98
KXG25648	Sorghum	cytosol	47.46	50.91
TraesCS3A01G315400.1	Wheat	cytosol	47.46	50.45
TraesCS3B01G351500.1	Wheat	cytosol	47.46	50.45
GSMUA_Achr7P27110_001	Banana	cytosol	49.15	50.0
GSMUA_Achr8P01460_001	Banana	cytosol	47.46	50.0
GSMUA_Achr9P30020_001	Banana	cytosol	47.46	49.56
TraesCS3D01G316100.1	Wheat	cytosol	46.61	49.55
Zm00001d031419_P001	Maize	cytosol	45.76	49.09
TraesCS7A01G450400.1	Wheat	cytosol	50.85	48.0
PGSC0003DMT400067274	Potato	cytosol	48.31	47.9
PGSC0003DMT400064403	Potato	cytosol	47.46	47.86
TraesCS7B01G350200.1	Wheat	cytosol	50.85	46.51
Os06t0683400-02	Rice	cytosol	49.15	46.4
PGSC0003DMT400064404	Potato	cytosol	47.46	45.9
TraesCS7D01G439800.1	Wheat	cytosol	50.85	44.78
EER88832	Sorghum	cytosol	48.31	43.85
Zm00001d014491_P001	Maize	cytosol	48.31	43.18
HORVU3Hr1G077070.1	Barley	cytosol	48.31	43.18
PGSC0003DMT400036057	Potato	cytosol	41.53	42.61
PGSC0003DMT400048609	Potato	cytosol	39.83	38.52
HORVU7Hr1G101740.2	Barley	cytosol, plastid	37.29	27.33

Protein Annotations

EnsemblPlants:PGSC0003DMT400064349	EnsemblPlantsGene:PGSC0003DMG400025000	Gene3D:1.10.238.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005509
InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	InterPro:IPR002048	PANTHER:PTHR44180	PANTHER:PTHR44180:SF3
PFAM:PF13833	PFscan:PS50222	PGSC:PGSC0003DMG400025000	ScanProsite:PS00018	SUPFAM:SSF47473	UniParc:UPI000295254D
UniProt:M1CC76	MapMan:35.1	:	:	:	:

Description

Ccd1 [Source:PGSC_GENE;Acc:PGSC0003DMG400025000]

Coordinates

chr10:+:1667786..1669477

Molecular Weight (calculated)

13333.3 Da

IEP (calculated)

3.485

GRAVY (calculated)

0.283

Length

118 amino acids

Sequence
(BLAST)

001: MISCMDAVDY EDPFGFEDYF PSMIDTLGVE MFMEELYNGF CLLMDVSIGL ITFESLKRNT LLMGLSELKD DELLCMLIEG DLDGDGALNQ MEFCSLMFRL
101: SPGLMMDGFK SNDLQVIS

Best Arabidopsis Sequence Match ( AT5G54490.1 )
(BLAST)

001: MASPKSSTRP NQENQEPQFQ DFFPTMAGKL GGEGLIEEIC KGFELLMDKD KGVITFESLR RNASTVLGLG DLTDDDVRYM INEGDFDRDG ALNQMEFCVL
101: MFRLSPELME ASRCVVTEVI EEEFYRH

Arabidopsis Description

PBP1PBP1 [Source:UniProtKB/TrEMBL;Acc:A0A178URF6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.