Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- plasma membrane 1
- mitochondrion 1
- plastid 1
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
GSMUA_Achr5P02480_001 | |
GSMUA_Achr7P01120_001 |
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT5G54490.1 | GSMUA_Achr5P02480_001 | AT2G34650.1 | 12857841 |
AT5G54490.1 | GSMUA_Achr7P01120_001 | AT2G34650.1 | 12857841 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
GSMUA_Achr5P26360_001 | Banana | cytosol | 76.42 | 68.64 |
TraesCS7A01G450400.1 | Wheat | cytosol | 74.53 | 63.2 |
TraesCS7B01G350200.1 | Wheat | cytosol | 74.53 | 61.24 |
VIT_12s0134g00240.t01 | Wine grape | cytosol | 66.98 | 61.21 |
Os06t0683400-02 | Rice | cytosol | 70.75 | 60.0 |
GSMUA_Achr7P27110_001 | Banana | cytosol | 65.09 | 59.48 |
GSMUA_Achr9P30020_001 | Banana | cytosol | 62.26 | 58.41 |
TraesCS7D01G439800.1 | Wheat | cytosol | 73.58 | 58.21 |
VIT_00s0347g00040.t01 | Wine grape | cytosol | 61.32 | 57.52 |
KRH55440 | Soybean | cytosol | 54.72 | 57.43 |
EER88832 | Sorghum | cytosol | 69.81 | 56.92 |
Solyc03g006710.1.1 | Tomato | cytosol | 61.32 | 56.52 |
PGSC0003DMT400057519 | Potato | cytosol | 61.32 | 56.52 |
VIT_19s0014g03970.t01 | Wine grape | cytosol | 57.55 | 56.48 |
PGSC0003DMT400064403 | Potato | cytosol | 62.26 | 56.41 |
PGSC0003DMT400012996 | Potato | cytosol | 60.38 | 55.65 |
Solyc02g079520.1.1 | Tomato | nucleus | 60.38 | 55.65 |
Zm00001d014491_P001 | Maize | cytosol | 68.87 | 55.3 |
KRH21601 | Soybean | cytosol | 59.43 | 55.26 |
KRH10720 | Soybean | cytosol | 59.43 | 55.26 |
Solyc07g053050.1.1 | Tomato | cytosol | 60.38 | 55.17 |
KRH27149 | Soybean | cytosol | 59.43 | 54.78 |
KRH25972 | Soybean | cytosol | 61.32 | 54.62 |
KRH55477 | Soybean | cytosol | 60.38 | 53.78 |
GSMUA_Achr8P01460_001 | Banana | cytosol | 56.6 | 53.57 |
KRH22182 | Soybean | cytosol | 58.49 | 53.45 |
KRH26016 | Soybean | cytosol | 55.66 | 53.15 |
Solyc07g063690.1.1 | Tomato | cytosol | 56.6 | 53.1 |
PGSC0003DMT400049542 | Potato | cytosol | 56.6 | 53.1 |
PGSC0003DMT400067274 | Potato | cytosol | 59.43 | 52.94 |
VIT_02s0012g00640.t01 | Wine grape | cytosol | 55.66 | 52.68 |
PGSC0003DMT400064404 | Potato | cytosol | 60.38 | 52.46 |
Solyc10g006700.1.1 | Tomato | cytosol | 60.38 | 52.46 |
KRH25447 | Soybean | cytosol | 61.32 | 51.59 |
VIT_02s0012g00650.t01 | Wine grape | cytosol | 53.77 | 51.35 |
CDY29293 | Canola | cytosol | 61.32 | 51.18 |
Solyc10g006660.2.1 | Tomato | cytosol | 62.26 | 51.16 |
PGSC0003DMT400064349 | Potato | cytosol | 56.6 | 50.85 |
Solyc02g079720.1.1 | Tomato | cytosol | 50.94 | 50.47 |
AT4G27280.1 | Thale cress | cytosol | 60.38 | 49.23 |
KRH26856 | Soybean | cytosol | 56.6 | 49.18 |
VIT_02s0012g00660.t01 | Wine grape | cytosol | 55.66 | 49.17 |
KRH22173 | Soybean | cytosol | 56.6 | 48.39 |
KRH22491 | Soybean | cytosol | 55.66 | 48.36 |
CDY42456 | Canola | cytosol | 59.43 | 48.09 |
Bra022723.1-P | Field mustard | cytosol | 59.43 | 48.09 |
CDY61745 | Canola | cytosol | 59.43 | 48.09 |
Bra002984.1-P | Field mustard | cytosol | 59.43 | 48.09 |
CDY28767 | Canola | cytosol | 58.49 | 47.33 |
AT5G54490.1 | Thale cress | cytosol | 56.6 | 47.24 |
KRH27151 | Soybean | cytosol | 53.77 | 46.72 |
CDY48640 | Canola | cytosol | 57.55 | 46.56 |
PGSC0003DMT400036057 | Potato | cytosol | 50.0 | 46.09 |
VIT_19s0014g04650.t01 | Wine grape | cytosol | 65.09 | 46.0 |
GSMUA_Achr1P03980_001 | Banana | cytosol | 50.94 | 43.55 |
Solyc10g006740.2.1 | Tomato | extracellular | 53.77 | 39.04 |
HORVU7Hr1G101740.2 | Barley | cytosol, plastid | 56.6 | 37.27 |
CDX89262 | Canola | cytosol, peroxisome, plastid | 62.26 | 24.26 |
Bra026364.1-P | Field mustard | cytosol | 61.32 | 22.26 |
Protein Annotations
EnsemblPlants:GSMUA_Achr3P23000_001 | EnsemblPlants:GSMUA_Achr3T23000_001 | EnsemblPlantsGene:GSMUA_Achr3G23000_001 | Gene3D:1.10.238.10 | GO:GO:0003674 | GO:GO:0005488 |
GO:GO:0005509 | InterPro:EF-hand-dom_pair | InterPro:EF_Hand_1_Ca_BS | InterPro:EF_hand_dom | InterPro:IPR002048 | PANTHER:PTHR44180 |
PANTHER:PTHR44180:SF1 | PFAM:PF13833 | PFscan:PS50222 | ScanProsite:PS00018 | SEG:seg | SUPFAM:SSF47473 |
UniParc:UPI00029656AD | UniProt:M0SH16 | MapMan:35.1 | : | : | : |
Description
Putative Caltractin (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr3G23000_001]
Coordinates
chr3:-:23803123..23803443
Molecular Weight (calculated)
11824.3 Da
IEP (calculated)
4.278
GRAVY (calculated)
-0.100
Length
106 amino acids
Sequence
(BLAST)
(BLAST)
001: MAARRQPVEF EDFLPLMVEK LGEEGLMEEL SNGFRLLMDP RRGLITFDSL KRNAALLGLG ALGDDDLRAM LREGDSDGDG ALSQWEFCVL MVRLSPDLMD
101: HHAFAA
101: HHAFAA
001: MASPKSSTRP NQENQEPQFQ DFFPTMAGKL GGEGLIEEIC KGFELLMDKD KGVITFESLR RNASTVLGLG DLTDDDVRYM INEGDFDRDG ALNQMEFCVL
101: MFRLSPELME ASRCVVTEVI EEEFYRH
101: MFRLSPELME ASRCVVTEVI EEEFYRH
Arabidopsis Description
PBP1PBP1 [Source:UniProtKB/TrEMBL;Acc:A0A178URF6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.