Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY48640 | Canola | cytosol | 87.4 | 84.73 |
| Bra022723.1-P | Field mustard | cytosol | 85.83 | 83.21 |
| CDY28767 | Canola | cytosol | 84.25 | 81.68 |
| Bra002984.1-P | Field mustard | cytosol | 81.1 | 78.63 |
| CDY42456 | Canola | cytosol | 81.1 | 78.63 |
| CDY61745 | Canola | cytosol | 81.1 | 78.63 |
| AT4G27280.1 | Thale cress | cytosol | 80.31 | 78.46 |
| PGSC0003DMT400064403 | Potato | cytosol | 60.63 | 65.81 |
| KRH22182 | Soybean | cytosol | 57.48 | 62.93 |
| PGSC0003DMT400064404 | Potato | cytosol | 59.84 | 62.3 |
| KRH27149 | Soybean | cytosol | 55.91 | 61.74 |
| Solyc10g006700.1.1 | Tomato | cytosol | 59.06 | 61.48 |
| Solyc10g006660.2.1 | Tomato | cytosol | 60.63 | 59.69 |
| Os01t0783700-01 | Rice | cytosol | 51.97 | 59.46 |
| TraesCS3A01G315400.1 | Wheat | cytosol | 51.18 | 58.56 |
| KRH25972 | Soybean | cytosol | 54.33 | 57.98 |
| KXG33526 | Sorghum | cytosol | 46.46 | 57.84 |
| TraesCS3B01G351500.1 | Wheat | cytosol | 50.39 | 57.66 |
| GSMUA_Achr8P01460_001 | Banana | cytosol | 50.39 | 57.14 |
| GSMUA_Achr7P27110_001 | Banana | cytosol | 51.97 | 56.9 |
| GSMUA_Achr9P30020_001 | Banana | cytosol | 50.39 | 56.64 |
| GSMUA_Achr3P23000_001 | Banana | cytosol | 47.24 | 56.6 |
| TraesCS3D01G316100.1 | Wheat | cytosol | 48.82 | 55.86 |
| KRH55477 | Soybean | cytosol | 51.97 | 55.46 |
| KXG25648 | Sorghum | cytosol | 48.03 | 55.45 |
| Zm00001d031419_P001 | Maize | cytosol | 48.03 | 55.45 |
| Zm00001d043258_P001 | Maize | cytosol | 39.37 | 53.76 |
| GSMUA_Achr5P26360_001 | Banana | cytosol | 48.03 | 51.69 |
| TraesCS7A01G450400.1 | Wheat | cytosol | 50.39 | 51.2 |
| VIT_19s0014g04650.t01 | Wine grape | cytosol | 59.84 | 50.67 |
| TraesCS7B01G350200.1 | Wheat | cytosol | 49.61 | 48.84 |
| Os06t0683400-02 | Rice | cytosol | 48.03 | 48.8 |
| HORVU3Hr1G077070.1 | Barley | cytosol | 49.61 | 47.73 |
| TraesCS7D01G439800.1 | Wheat | cytosol | 49.61 | 47.01 |
| EER88832 | Sorghum | cytosol | 47.24 | 46.15 |
| Zm00001d014491_P001 | Maize | cytosol | 46.46 | 44.7 |
| AT2G46600.1 | Thale cress | cytosol | 42.52 | 40.0 |
| HORVU7Hr1G101740.2 | Barley | cytosol, plastid | 38.58 | 30.43 |
Protein Annotations
| Gene3D:1.10.238.10 | MapMan:35.1 | EntrezGene:835537 | UniProt:A0A178URF6 | ProteinID:AED96501.1 | ArrayExpress:AT5G54490 |
| EnsemblPlantsGene:AT5G54490 | RefSeq:AT5G54490 | TAIR:AT5G54490 | RefSeq:AT5G54490-TAIR-G | EnsemblPlants:AT5G54490.1 | TAIR:AT5G54490.1 |
| EMBL:AY084485 | EMBL:AY363868 | ProteinID:BAA97522.1 | EMBL:BT024572 | InterPro:EF-hand-dom_pair | InterPro:EF_Hand_1_Ca_BS |
| InterPro:EF_hand_dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005509 | GO:GO:0005515 | GO:GO:0008150 |
| GO:GO:0009719 | GO:GO:0009733 | GO:GO:0046872 | InterPro:IPR002048 | RefSeq:NP_200260.1 | ProteinID:OAO95704.1 |
| Symbol:PBP1 | PFAM:PF13833 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| ScanProsite:PS00018 | PFscan:PS50222 | PANTHER:PTHR44180 | PANTHER:PTHR44180:SF1 | UniProt:Q9LSQ6 | SUPFAM:SSF47473 |
| UniParc:UPI00000A24E2 | SEG:seg | : | : | : | : |
Description
PBP1PBP1 [Source:UniProtKB/TrEMBL;Acc:A0A178URF6]
Coordinates
chr5:+:22121102..22122122
Molecular Weight (calculated)
14469.2 Da
IEP (calculated)
4.142
GRAVY (calculated)
-0.418
Length
127 amino acids
Sequence
(BLAST)
(BLAST)
001: MASPKSSTRP NQENQEPQFQ DFFPTMAGKL GGEGLIEEIC KGFELLMDKD KGVITFESLR RNASTVLGLG DLTDDDVRYM INEGDFDRDG ALNQMEFCVL
101: MFRLSPELME ASRCVVTEVI EEEFYRH
101: MFRLSPELME ASRCVVTEVI EEEFYRH
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.