Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 1
- cytosol 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7B01G350200.1 | Wheat | cytosol | 93.28 | 96.9 |
| TraesCS7A01G450400.1 | Wheat | cytosol | 90.3 | 96.8 |
| Os06t0683400-02 | Rice | cytosol | 82.09 | 88.0 |
| EER88832 | Sorghum | cytosol | 79.85 | 82.31 |
| Zm00001d014491_P001 | Maize | cytosol | 78.36 | 79.55 |
| GSMUA_Achr3P23000_001 | Banana | cytosol | 58.21 | 73.58 |
| GSMUA_Achr5P26360_001 | Banana | cytosol | 56.72 | 64.41 |
| VIT_12s0134g00240.t01 | Wine grape | cytosol | 52.24 | 60.34 |
| VIT_19s0014g03970.t01 | Wine grape | cytosol | 48.51 | 60.19 |
| Solyc03g006710.1.1 | Tomato | cytosol | 50.0 | 58.26 |
| PGSC0003DMT400064403 | Potato | cytosol | 50.75 | 58.12 |
| VIT_00s0347g00040.t01 | Wine grape | cytosol | 48.51 | 57.52 |
| KRH55440 | Soybean | cytosol | 43.28 | 57.43 |
| KRH22182 | Soybean | cytosol | 49.25 | 56.9 |
| PGSC0003DMT400049542 | Potato | cytosol | 47.76 | 56.64 |
| PGSC0003DMT400012996 | Potato | cytosol | 48.51 | 56.52 |
| VIT_02s0012g00640.t01 | Wine grape | cytosol | 47.01 | 56.25 |
| KRH21601 | Soybean | cytosol | 47.76 | 56.14 |
| KRH10720 | Soybean | cytosol | 47.76 | 56.14 |
| Solyc07g063690.1.1 | Tomato | cytosol | 47.01 | 55.75 |
| KRH27149 | Soybean | cytosol | 47.76 | 55.65 |
| TraesCS3D01G316100.1 | Wheat | cytosol | 45.52 | 54.95 |
| PGSC0003DMT400064404 | Potato | cytosol | 50.0 | 54.92 |
| Solyc10g006700.1.1 | Tomato | cytosol | 50.0 | 54.92 |
| PGSC0003DMT400057519 | Potato | cytosol | 47.01 | 54.78 |
| KRH26016 | Soybean | cytosol | 44.78 | 54.05 |
| Solyc02g079520.1.1 | Tomato | nucleus | 46.27 | 53.91 |
| KRH25972 | Soybean | cytosol | 47.76 | 53.78 |
| Solyc07g053050.1.1 | Tomato | cytosol | 46.27 | 53.45 |
| HORVU7Hr1G101740.2 | Barley | cytosol, plastid | 64.18 | 53.42 |
| VIT_02s0012g00650.t01 | Wine grape | cytosol | 44.03 | 53.15 |
| CDY29293 | Canola | cytosol | 50.0 | 52.76 |
| Solyc10g006660.2.1 | Tomato | cytosol | 50.75 | 52.71 |
| KRH25447 | Soybean | cytosol | 49.25 | 52.38 |
| KRH55477 | Soybean | cytosol | 46.27 | 52.1 |
| PGSC0003DMT400064349 | Potato | cytosol | 44.78 | 50.85 |
| AT4G27280.1 | Thale cress | cytosol | 49.25 | 50.77 |
| PGSC0003DMT400067274 | Potato | cytosol | 44.78 | 50.42 |
| Bra022723.1-P | Field mustard | cytosol | 49.25 | 50.38 |
| CDY61745 | Canola | cytosol | 49.25 | 50.38 |
| CDY42456 | Canola | cytosol | 49.25 | 50.38 |
| Bra002984.1-P | Field mustard | cytosol | 49.25 | 50.38 |
| KRH26856 | Soybean | cytosol | 45.52 | 50.0 |
| VIT_02s0012g00660.t01 | Wine grape | cytosol | 44.78 | 50.0 |
| KRH22173 | Soybean | cytosol | 46.27 | 50.0 |
| CDY28767 | Canola | cytosol | 48.51 | 49.62 |
| AT5G54490.1 | Thale cress | cytosol | 47.01 | 49.61 |
| KRH22491 | Soybean | cytosol | 44.78 | 49.18 |
| CDY48640 | Canola | cytosol | 47.76 | 48.85 |
| Solyc02g079720.1.1 | Tomato | cytosol | 38.81 | 48.6 |
| KRH27151 | Soybean | cytosol | 43.28 | 47.54 |
| PGSC0003DMT400036057 | Potato | cytosol | 38.81 | 45.22 |
| VIT_19s0014g04650.t01 | Wine grape | cytosol | 49.25 | 44.0 |
| Solyc10g006740.2.1 | Tomato | extracellular | 42.54 | 39.04 |
| CDX89262 | Canola | cytosol, peroxisome, plastid | 50.0 | 24.63 |
| Bra026364.1-P | Field mustard | cytosol | 49.25 | 22.6 |
Protein Annotations
| EnsemblPlants:TraesCS7D01G439800.1 | EnsemblPlantsGene:TraesCS7D01G439800 | Gene3D:1.10.238.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005509 |
| InterPro:EF-hand-dom_pair | InterPro:EF_Hand_1_Ca_BS | InterPro:EF_hand_dom | InterPro:IPR002048 | PANTHER:PTHR44180 | PANTHER:PTHR44180:SF5 |
| PFAM:PF13833 | PFscan:PS50222 | ScanProsite:PS00018 | SEG:seg | SUPFAM:SSF47473 | MapMan:35.1 |
Description
No Description!
Coordinates
chr7D:-:559393858..559394262
Molecular Weight (calculated)
14876.7 Da
IEP (calculated)
4.176
GRAVY (calculated)
-0.302
Length
134 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAHHQQQQQ PQPQQQSQQQ AVGFEDYLPV MAERLGEEGL MEELAAGFRL LMDPASGLIT FHSLRRNAPL LGLGGMSDDD LRGMLAEGDF DGDGALSQME
101: FCVLMVRLSP DLMDQPRRWL DDAVAQASHF LFTS
101: FCVLMVRLSP DLMDQPRRWL DDAVAQASHF LFTS
001: MASPKSSTRP NQENQEPQFQ DFFPTMAGKL GGEGLIEEIC KGFELLMDKD KGVITFESLR RNASTVLGLG DLTDDDVRYM INEGDFDRDG ALNQMEFCVL
101: MFRLSPELME ASRCVVTEVI EEEFYRH
101: MFRLSPELME ASRCVVTEVI EEEFYRH
Arabidopsis Description
PBP1PBP1 [Source:UniProtKB/TrEMBL;Acc:A0A178URF6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.