Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- nucleus 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc02g079520.1.1 | Tomato | nucleus | 93.91 | 93.91 |
| PGSC0003DMT400012996 | Potato | cytosol | 71.3 | 71.3 |
| KRH10720 | Soybean | cytosol | 63.48 | 64.04 |
| KRH21601 | Soybean | cytosol | 61.74 | 62.28 |
| GSMUA_Achr3P23000_001 | Banana | cytosol | 56.52 | 61.32 |
| VIT_00s0347g00040.t01 | Wine grape | cytosol | 58.26 | 59.29 |
| GSMUA_Achr9P30020_001 | Banana | cytosol | 55.65 | 56.64 |
| PGSC0003DMT400067274 | Potato | cytosol | 57.39 | 55.46 |
| Os01t0783700-01 | Rice | cytosol | 53.04 | 54.95 |
| GSMUA_Achr5P26360_001 | Banana | cytosol | 55.65 | 54.24 |
| TraesCS3A01G315400.1 | Wheat | cytosol | 52.17 | 54.05 |
| GSMUA_Achr7P27110_001 | Banana | cytosol | 53.91 | 53.45 |
| TraesCS3B01G351500.1 | Wheat | cytosol | 51.3 | 53.15 |
| TraesCS3D01G316100.1 | Wheat | cytosol | 50.43 | 52.25 |
| Os06t0683400-02 | Rice | cytosol | 56.52 | 52.0 |
| PGSC0003DMT400049542 | Potato | cytosol | 50.43 | 51.33 |
| PGSC0003DMT400064403 | Potato | cytosol | 52.17 | 51.28 |
| KXG33526 | Sorghum | cytosol | 45.22 | 50.98 |
| GSMUA_Achr8P01460_001 | Banana | cytosol | 48.7 | 50.0 |
| PGSC0003DMT400064349 | Potato | cytosol | 51.3 | 50.0 |
| TraesCS7A01G450400.1 | Wheat | cytosol | 53.91 | 49.6 |
| Zm00001d043258_P001 | Maize | cytosol | 40.0 | 49.46 |
| TraesCS7B01G350200.1 | Wheat | cytosol | 54.78 | 48.84 |
| PGSC0003DMT400064404 | Potato | cytosol | 51.3 | 48.36 |
| KXG25648 | Sorghum | cytosol | 46.09 | 48.18 |
| Zm00001d031419_P001 | Maize | cytosol | 46.09 | 48.18 |
| TraesCS7D01G439800.1 | Wheat | cytosol | 54.78 | 47.01 |
| Zm00001d014491_P001 | Maize | cytosol | 53.91 | 46.97 |
| EER88832 | Sorghum | cytosol | 53.04 | 46.92 |
| PGSC0003DMT400036057 | Potato | cytosol | 43.48 | 43.48 |
| HORVU3Hr1G077070.1 | Barley | cytosol | 49.57 | 43.18 |
| PGSC0003DMT400048609 | Potato | cytosol | 41.74 | 39.34 |
| HORVU7Hr1G101740.2 | Barley | cytosol, plastid | 40.87 | 29.19 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400057519 | EnsemblPlantsGene:PGSC0003DMG400022340 | EntrezGene:102605957 | Gene3D:1.10.238.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005509 | InterPro:EF-hand-dom_pair | InterPro:EF_Hand_1_Ca_BS | InterPro:EF_hand_dom | InterPro:IPR002048 | PANTHER:PTHR44180 |
| PANTHER:PTHR44180:SF4 | PFAM:PF13833 | PFscan:PS50222 | PGSC:PGSC0003DMG400022340 | RefSeq:XP_006347169.1 | ScanProsite:PS00018 |
| SUPFAM:SSF47473 | UniParc:UPI000294C115 | UniProt:M1C182 | MapMan:35.1 | : | : |
Description
Ccd1 [Source:PGSC_GENE;Acc:PGSC0003DMG400022340]
Coordinates
chr2:-:35208193..35208858
Molecular Weight (calculated)
13215.0 Da
IEP (calculated)
4.180
GRAVY (calculated)
-0.192
Length
115 amino acids
Sequence
(BLAST)
(BLAST)
001: MAALGRDFVF EDFFPSMVEK LGSEGFLNEL KNGFRALMDK EREVITFESL KRNSALLGLE GMSDDELMCM LREGDLNGDD CLNEKEFCVL MVRLSPDLME
101: KSRMWFAHSV ENDVM
101: KSRMWFAHSV ENDVM
001: MEPTEKSMLL ETTSTTKMET KYEDMLPVMA EKMDVEEFVS ELCKGFSLLA DPERHLITAE SLRRNSGILG IEGMSKEDAQ GMVREGDLDG DGALNQTEFC
101: VLMVRLSPEM MEDAETWLEK ALTQELCNHN LSSMP
101: VLMVRLSPEM MEDAETWLEK ALTQELCNHN LSSMP
Arabidopsis Description
KICCalcium-binding protein KIC [Source:UniProtKB/Swiss-Prot;Acc:Q9ZPX9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.