Factsheet for VIT_00s0347g00040.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
plasma membrane 2
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_19s0014g03970.t01	Wine grape	cytosol	66.37	69.44
KRH21601	Soybean	cytosol	67.26	66.67
KRH10720	Soybean	cytosol	67.26	66.67
VIT_12s0134g00240.t01	Wine grape	cytosol	67.26	65.52
Solyc03g006710.1.1	Tomato	cytosol	65.49	64.35
PGSC0003DMT400012996	Potato	cytosol	65.49	64.35
VIT_02s0012g00650.t01	Wine grape	cytosol	61.06	62.16
VIT_02s0012g00640.t01	Wine grape	cytosol	61.06	61.61
GSMUA_Achr3P23000_001	Banana	cytosol	57.52	61.32
VIT_02s0012g00660.t01	Wine grape	cytosol	62.83	59.17
PGSC0003DMT400057519	Potato	cytosol	59.29	58.26
Solyc02g079520.1.1	Tomato	nucleus	59.29	58.26
Os01t0783700-01	Rice	cytosol	55.75	56.76
TraesCS3B01G351500.1	Wheat	cytosol	55.75	56.76
GSMUA_Achr9P30020_001	Banana	cytosol	56.64	56.64
KXG33526	Sorghum	cytosol	50.44	55.88
TraesCS3A01G315400.1	Wheat	cytosol	54.87	55.86
TraesCS3D01G316100.1	Wheat	cytosol	54.87	55.86
KXG25648	Sorghum	cytosol	53.98	55.45
GSMUA_Achr5P26360_001	Banana	cytosol	57.52	55.08
Zm00001d043258_P001	Maize	cytosol	45.13	54.84
GSMUA_Achr8P01460_001	Banana	cytosol	53.98	54.46
GSMUA_Achr7P27110_001	Banana	cytosol	55.75	54.31
Zm00001d031419_P001	Maize	cytosol	51.33	52.73
TraesCS7A01G450400.1	Wheat	cytosol	57.52	52.0
Os06t0683400-02	Rice	cytosol	56.64	51.2
TraesCS7B01G350200.1	Wheat	cytosol	57.52	50.39
EER88832	Sorghum	cytosol	57.52	50.0
VIT_19s0014g04650.t01	Wine grape	cytosol	65.49	49.33
TraesCS7D01G439800.1	Wheat	cytosol	57.52	48.51
Zm00001d014491_P001	Maize	cytosol	56.64	48.48
HORVU3Hr1G077070.1	Barley	cytosol	52.21	44.7
VIT_15s0046g00070.t01	Wine grape	cytosol	49.56	44.09
HORVU7Hr1G101740.2	Barley	cytosol, plastid	43.36	30.43

Protein Annotations

Gene3D:1.10.238.10	EntrezGene:100249342	wikigene:100249342	MapMan:35.1	UniProt:A5ARZ8	EMBL:AM433435
ProteinID:CAN67069	ProteinID:CAN67069.1	ProteinID:CCB45279	ProteinID:CCB45279.1	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS
InterPro:EF_hand_dom	EMBL:FN594994	GO:GO:0003674	GO:GO:0005488	GO:GO:0005509	InterPro:IPR002048
EntrezGene:LOC100249342	wikigene:LOC100249342	PFAM:PF13833	ScanProsite:PS00018	PFscan:PS50222	PANTHER:PTHR23050
PANTHER:PTHR23050:SF222	SUPFAM:SSF47473	UniParc:UPI000151F1D3	ArrayExpress:VIT_00s0347g00040	EnsemblPlantsGene:VIT_00s0347g00040	EnsemblPlants:VIT_00s0347g00040.t01
unigene:Vvi.21102	RefSeq:XP_002263028	RefSeq:XP_002263028.1	:	:	:

Description

No Description!

Coordinates

chrUn:-:24820521..24820956

Molecular Weight (calculated)

12569.1 Da

IEP (calculated)

4.121

GRAVY (calculated)

-0.015

Length

113 amino acids

Sequence
(BLAST)

001: MASRNGVVFE DFFPAMVERL GADGFMTELC NGFRLLMDGD KGVITFESLK RNSATLGLQN LSDDELRSMV TEGDLDGDGA LNQMEFCILM FRLSPGLMTS
101: SRRWLEEAIV NGF

Best Arabidopsis Sequence Match ( AT5G54490.1 )
(BLAST)

001: MASPKSSTRP NQENQEPQFQ DFFPTMAGKL GGEGLIEEIC KGFELLMDKD KGVITFESLR RNASTVLGLG DLTDDDVRYM INEGDFDRDG ALNQMEFCVL
101: MFRLSPELME ASRCVVTEVI EEEFYRH

Arabidopsis Description

PBP1PBP1 [Source:UniProtKB/TrEMBL;Acc:A0A178URF6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.