Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- cytosol 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d031068_P001 | |
| Zm00001d033234_P001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G54490.1 | Zm00001d031068_P001 | AT2G34650.1 | 12857841 |
| AT5G54490.1 | Zm00001d033234_P001 | AT2G34650.1 | 12857841 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER88832 | Sorghum | cytosol | 90.15 | 91.54 |
| Os06t0683400-02 | Rice | cytosol | 80.3 | 84.8 |
| TraesCS7A01G450400.1 | Wheat | cytosol | 78.79 | 83.2 |
| TraesCS7B01G350200.1 | Wheat | cytosol | 81.06 | 82.95 |
| TraesCS7D01G439800.1 | Wheat | cytosol | 79.55 | 78.36 |
| GSMUA_Achr3P23000_001 | Banana | cytosol | 55.3 | 68.87 |
| GSMUA_Achr5P26360_001 | Banana | cytosol | 58.33 | 65.25 |
| VIT_12s0134g00240.t01 | Wine grape | cytosol | 50.76 | 57.76 |
| KRH22182 | Soybean | cytosol | 50.0 | 56.9 |
| VIT_00s0347g00040.t01 | Wine grape | cytosol | 48.48 | 56.64 |
| KRH27149 | Soybean | cytosol | 49.24 | 56.52 |
| VIT_19s0014g03970.t01 | Wine grape | cytosol | 46.21 | 56.48 |
| PGSC0003DMT400064403 | Potato | cytosol | 50.0 | 56.41 |
| KRH10720 | Soybean | cytosol | 47.73 | 55.26 |
| KRH21601 | Soybean | cytosol | 47.73 | 55.26 |
| Solyc03g006710.1.1 | Tomato | cytosol | 47.73 | 54.78 |
| KRH25972 | Soybean | cytosol | 49.24 | 54.62 |
| PGSC0003DMT400049542 | Potato | cytosol | 46.21 | 53.98 |
| PGSC0003DMT400057519 | Potato | cytosol | 46.97 | 53.91 |
| Solyc02g079520.1.1 | Tomato | nucleus | 46.97 | 53.91 |
| VIT_02s0012g00640.t01 | Wine grape | cytosol | 45.45 | 53.57 |
| KRH55440 | Soybean | cytosol | 40.91 | 53.47 |
| PGSC0003DMT400064404 | Potato | cytosol | 49.24 | 53.28 |
| Solyc10g006700.1.1 | Tomato | cytosol | 49.24 | 53.28 |
| Solyc07g063690.1.1 | Tomato | cytosol | 45.45 | 53.1 |
| PGSC0003DMT400012996 | Potato | cytosol | 46.21 | 53.04 |
| Solyc07g053050.1.1 | Tomato | cytosol | 46.21 | 52.59 |
| PGSC0003DMT400067274 | Potato | cytosol | 46.97 | 52.1 |
| KRH55477 | Soybean | cytosol | 46.97 | 52.1 |
| VIT_02s0012g00650.t01 | Wine grape | cytosol | 43.18 | 51.35 |
| Solyc10g006660.2.1 | Tomato | cytosol | 50.0 | 51.16 |
| Zm00001d031419_P001 | Maize | cytosol | 41.67 | 50.0 |
| CDY29293 | Canola | cytosol | 47.73 | 49.61 |
| KRH26016 | Soybean | cytosol | 41.67 | 49.55 |
| KRH25447 | Soybean | cytosol | 46.97 | 49.21 |
| KRH26856 | Soybean | cytosol | 45.45 | 49.18 |
| Zm00001d043258_P001 | Maize | cytosol | 34.09 | 48.39 |
| KRH22491 | Soybean | cytosol | 44.7 | 48.36 |
| PGSC0003DMT400064349 | Potato | cytosol | 43.18 | 48.31 |
| HORVU7Hr1G101740.2 | Barley | cytosol, plastid | 58.33 | 47.83 |
| AT4G27280.1 | Thale cress | cytosol | 46.97 | 47.69 |
| Solyc02g079720.1.1 | Tomato | cytosol | 38.64 | 47.66 |
| VIT_02s0012g00660.t01 | Wine grape | cytosol | 43.18 | 47.5 |
| CDY48640 | Canola | cytosol | 46.97 | 47.33 |
| KRH22173 | Soybean | cytosol | 43.94 | 46.77 |
| Bra002984.1-P | Field mustard | cytosol | 46.21 | 46.56 |
| CDY42456 | Canola | cytosol | 46.21 | 46.56 |
| Bra022723.1-P | Field mustard | cytosol | 46.21 | 46.56 |
| CDY28767 | Canola | cytosol | 46.21 | 46.56 |
| CDY61745 | Canola | cytosol | 46.21 | 46.56 |
| AT5G54490.1 | Thale cress | cytosol | 44.7 | 46.46 |
| KRH27151 | Soybean | cytosol | 40.91 | 44.26 |
| PGSC0003DMT400036057 | Potato | cytosol | 37.88 | 43.48 |
| VIT_19s0014g04650.t01 | Wine grape | cytosol | 49.24 | 43.33 |
| Zm00001d053926_P001 | Maize | cytosol | 50.76 | 40.12 |
| Solyc10g006740.2.1 | Tomato | extracellular | 40.91 | 36.99 |
| CDX89262 | Canola | cytosol, peroxisome, plastid | 47.73 | 23.16 |
| Bra026364.1-P | Field mustard | cytosol | 46.97 | 21.23 |
Protein Annotations
| Gene3D:1.10.238.10 | EntrezGene:100285110 | MapMan:35.1 | ProteinID:AQK66379.1 | UniProt:B6U0W1 | InterPro:EF-hand-dom_pair |
| InterPro:EF_Hand_1_Ca_BS | InterPro:EF_hand_dom | EMBL:EU970876 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005509 |
| InterPro:IPR002048 | PFAM:PF13833 | ScanProsite:PS00018 | PFscan:PS50222 | PANTHER:PTHR44180 | PANTHER:PTHR44180:SF5 |
| SUPFAM:SSF47473 | UniParc:UPI000182F4F2 | EnsemblPlantsGene:Zm00001d014491 | EnsemblPlants:Zm00001d014491_P001 | EnsemblPlants:Zm00001d014491_T001 | SEG:seg |
Description
EF-hand Ca2+-binding protein CCD1
Coordinates
chr5:+:50064948..50065346
Molecular Weight (calculated)
14319.1 Da
IEP (calculated)
4.082
GRAVY (calculated)
-0.097
Length
132 amino acids
Sequence
(BLAST)
(BLAST)
001: MASQQRQQQA GAAAAASSAV GFEDYLPVMA ERLGEDGLMR ELASGFRLLM DPARGLITFD SLRRNAPLLG LGGMSDADLR GMLAEGDFDG DGALSETEFC
101: VLMVRLSPEL MDEPRRWLDD AVDQAARFLF TS
101: VLMVRLSPEL MDEPRRWLDD AVDQAARFLF TS
001: MEPTEKSMLL ETTSTTKMET KYEDMLPVMA EKMDVEEFVS ELCKGFSLLA DPERHLITAE SLRRNSGILG IEGMSKEDAQ GMVREGDLDG DGALNQTEFC
101: VLMVRLSPEM MEDAETWLEK ALTQELCNHN LSSMP
101: VLMVRLSPEM MEDAETWLEK ALTQELCNHN LSSMP
Arabidopsis Description
KICCalcium-binding protein KIC [Source:UniProtKB/Swiss-Prot;Acc:Q9ZPX9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.