CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
plasma membrane 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH03376
KRH21098
KRH54462
KRH57009
KRH59216
KRH63457

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G54490.1	KRH21098	AT2G34650.1	12857841
AT5G54490.1	KRH59216	AT2G34650.1	12857841
AT5G54490.1	KRH03376	AT3G48100.1	18642946
AT5G54490.1	KRH54462	AT3G48100.1	18642946
AT5G54490.1	KRH57009	AT3G48100.1	18642946
AT5G54490.1	KRH63457	AT3G48100.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH27149	Soybean	cytosol	94.83	95.65
KRH25972	Soybean	cytosol	81.03	78.99
KRH55477	Soybean	cytosol	75.86	73.95
PGSC0003DMT400064403	Potato	cytosol	70.69	70.09
Solyc10g006700.1.1	Tomato	cytosol	72.41	68.85
PGSC0003DMT400064404	Potato	cytosol	72.41	68.85
Solyc10g006660.2.1	Tomato	cytosol	70.69	63.57
KRH25447	Soybean	cytosol	66.38	61.11
GSMUA_Achr8P01460_001	Banana	cytosol	58.62	60.71
KRH26856	Soybean	cytosol	62.07	59.02
GSMUA_Achr3P23000_001	Banana	cytosol	53.45	58.49
VIT_19s0014g04650.t01	Wine grape	cytosol	75.0	58.0
TraesCS3A01G315400.1	Wheat	cytosol	55.17	57.66
AT5G54490.1	Thale cress	cytosol	62.93	57.48
CDY29293	Canola	cytosol	62.93	57.48
KRH22491	Soybean	cytosol	60.34	57.38
KRH10720	Soybean	cytosol	56.03	57.02
KRH21601	Soybean	cytosol	56.03	57.02
TraesCS3B01G351500.1	Wheat	cytosol	54.31	56.76
Os01t0783700-01	Rice	cytosol	54.31	56.76
GSMUA_Achr9P30020_001	Banana	cytosol	55.17	56.64
KRH55440	Soybean	cytosol	49.14	56.44
KXG33526	Sorghum	cytosol	49.14	55.88
CDY28767	Canola	cytosol	62.93	55.73
AT4G27280.1	Thale cress	cytosol	62.07	55.38
GSMUA_Achr7P27110_001	Banana	cytosol	55.17	55.17
CDY61745	Canola	cytosol	62.07	54.96
Bra022723.1-P	Field mustard	cytosol	62.07	54.96
CDY48640	Canola	cytosol	62.07	54.96
CDY42456	Canola	cytosol	62.07	54.96
Bra002984.1-P	Field mustard	cytosol	62.07	54.96
TraesCS3D01G316100.1	Wheat	cytosol	52.59	54.95
GSMUA_Achr5P26360_001	Banana	cytosol	55.17	54.24
TraesCS7A01G450400.1	Wheat	cytosol	56.9	52.8
KXG25648	Sorghum	cytosol	50.0	52.73
Os06t0683400-02	Rice	cytosol	56.03	52.0
Zm00001d043258_P001	Maize	cytosol	41.38	51.61
KRH26016	Soybean	cytosol	49.14	51.35
TraesCS7B01G350200.1	Wheat	cytosol	56.9	51.16
Zm00001d031419_P001	Maize	cytosol	48.28	50.91
EER88832	Sorghum	cytosol	56.9	50.77
Zm00001d014491_P001	Maize	cytosol	56.9	50.0
TraesCS7D01G439800.1	Wheat	cytosol	56.9	49.25
KRH22173	Soybean	cytosol	50.86	47.58
KRH27151	Soybean	cytosol	50.0	47.54
KRH06431	Soybean	cytosol	49.14	45.6
KRH47865	Soybean	cytosol	48.28	44.8
HORVU3Hr1G077070.1	Barley	cytosol	50.86	44.7
KRG97213	Soybean	cytosol	48.28	44.44
KRH68937	Soybean	cytosol	47.41	43.65
HORVU7Hr1G101740.2	Barley	cytosol, plastid	42.24	30.43
CDX89262	Canola	cytosol, peroxisome, plastid	62.07	26.47
Bra026364.1-P	Field mustard	cytosol	61.21	24.32

Protein Annotations

Gene3D:1.10.238.10	EntrezGene:100306396	MapMan:35.1	EMBL:ACUP02008391	EMBL:BT090472	UniProt:C6SZ72
InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	EnsemblPlantsGene:GLYMA_13G283600	GO:GO:0003674	GO:GO:0005488
GO:GO:0005509	InterPro:IPR002048	EnsemblPlants:KRH22182	ProteinID:KRH22182	ProteinID:KRH22182.1	PFAM:PF13833
ScanProsite:PS00018	PFscan:PS50222	PANTHER:PTHR23050	PANTHER:PTHR23050:SF170	SUPFAM:SSF47473	UniParc:UPI0001B14F26

Description

hypothetical protein

Coordinates

chr13:+:38485648..38487299

Molecular Weight (calculated)

13142.7 Da

IEP (calculated)

3.858

GRAVY (calculated)

-0.233

Length

116 amino acids

Sequence
(BLAST)

001: MAAQENNFQD YLPVMANKLG GDGLIDELCN GFDLLKDSDK GVITFESLKR NSYLLGLQGL SDEDLRSMVL EGDFDGDGAL NQMEFCVLMF RLSPELMEGS
101: KMWLEQVLQQ ELKDYF

Best Arabidopsis Sequence Match ( AT5G54490.1 )
(BLAST)

001: MASPKSSTRP NQENQEPQFQ DFFPTMAGKL GGEGLIEEIC KGFELLMDKD KGVITFESLR RNASTVLGLG DLTDDDVRYM INEGDFDRDG ALNQMEFCVL
101: MFRLSPELME ASRCVVTEVI EEEFYRH

Arabidopsis Description

PBP1PBP1 [Source:UniProtKB/TrEMBL;Acc:A0A178URF6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.