Factsheet for Bra002984.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
cytosol 3
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra005403.1-P
Bra018084.1-P
Bra019524.1-P
Bra021925.1-P
Bra033773.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G54490.1	Bra005403.1-P	AT2G34650.1	12857841
AT5G54490.1	Bra021925.1-P	AT2G34650.1	12857841
AT5G54490.1	Bra018084.1-P	AT3G48100.1	18642946
AT5G54490.1	Bra019524.1-P	AT3G48100.1	18642946
AT5G54490.1	Bra033773.1-P	AT3G48100.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY61745	Canola	cytosol	99.24	99.24
CDY42456	Canola	cytosol	98.47	98.47
Bra022723.1-P	Field mustard	cytosol	90.08	90.08
AT5G54490.1	Thale cress	cytosol	78.63	81.1
PGSC0003DMT400064403	Potato	cytosol	61.07	68.38
PGSC0003DMT400064404	Potato	cytosol	61.07	65.57
Solyc10g006700.1.1	Tomato	cytosol	60.31	64.75
KRH22182	Soybean	cytosol	54.96	62.07
Solyc10g006660.2.1	Tomato	cytosol	61.07	62.02
KRH27149	Soybean	cytosol	54.2	61.74
GSMUA_Achr3P23000_001	Banana	cytosol	48.09	59.43
KRH25972	Soybean	cytosol	52.67	57.98
Os01t0783700-01	Rice	cytosol	48.85	57.66
GSMUA_Achr7P27110_001	Banana	cytosol	49.62	56.03
TraesCS3A01G315400.1	Wheat	cytosol	47.33	55.86
TraesCS3B01G351500.1	Wheat	cytosol	46.56	54.95
KXG33526	Sorghum	cytosol	42.75	54.9
Zm00001d043258_P001	Maize	cytosol	38.93	54.84
KRH55477	Soybean	cytosol	49.62	54.62
Os06t0683400-02	Rice	cytosol	51.91	54.4
TraesCS3D01G316100.1	Wheat	cytosol	45.8	54.05
GSMUA_Achr9P30020_001	Banana	cytosol	46.56	53.98
GSMUA_Achr8P01460_001	Banana	cytosol	45.8	53.57
TraesCS7A01G450400.1	Wheat	cytosol	50.38	52.8
Zm00001d031419_P001	Maize	cytosol	44.27	52.73
TraesCS7B01G350200.1	Wheat	cytosol	51.15	51.94
KXG25648	Sorghum	cytosol	42.75	50.91
GSMUA_Achr5P26360_001	Banana	cytosol	45.8	50.85
VIT_19s0014g04650.t01	Wine grape	cytosol	57.25	50.0
TraesCS7D01G439800.1	Wheat	cytosol	50.38	49.25
EER88832	Sorghum	cytosol	47.33	47.69
Bra000430.1-P	Field mustard	cytosol	42.75	47.46
Zm00001d014491_P001	Maize	cytosol	46.56	46.21
Bra004524.1-P	Field mustard	cytosol	38.17	45.87
HORVU3Hr1G077070.1	Barley	cytosol	45.8	45.45
Bra039271.1-P	Field mustard	cytosol	41.98	41.35
Bra026364.1-P	Field mustard	cytosol	79.39	35.62
HORVU7Hr1G101740.2	Barley	cytosol, plastid	38.93	31.68

Protein Annotations

EnsemblPlants:Bra002984.1	EnsemblPlants:Bra002984.1-P	EnsemblPlantsGene:Bra002984	Gene3D:1.10.238.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005509	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	InterPro:IPR002048	PANTHER:PTHR44180
PANTHER:PTHR44180:SF1	PFAM:PF13833	PFscan:PS50222	ScanProsite:PS00018	SEG:seg	SUPFAM:SSF47473
UniParc:UPI00025440A5	UniProt:M4CFK2	MapMan:35.1	:	:	:

Description

AT4G27280 (E=6e-051) | calcium-binding EF hand family protein

Coordinates

chrA10:+:6287792..6288187

Molecular Weight (calculated)

14594.2 Da

IEP (calculated)

4.245

GRAVY (calculated)

-0.365

Length

131 amino acids

Sequence
(BLAST)

001: MATPQSSTRP THQNPQPNFH DLFPAMAGKL GGEGLIDELC KGFELLMDGD KGVITFESLR RNASAVLGLG DLTDDDVRCM IDEGDFDRDG ALNQMEFCVL
101: MFRLSPDLMD ASRFVVTEAI EEEFGDRTHR H

Best Arabidopsis Sequence Match ( AT4G27280.1 )
(BLAST)

001: MASPKSPTRP TQQNPQPNFH DFLPTMAGNL GGEGLIGELC NGFELLMDRE KGVITFESLR RNAAAVLGLG DLTDEDVRCM IKEGDFDCDG ALNQMEFCVL
101: MFRLSPDLME ASRCLVTEVI EEEFGFTRRH

Arabidopsis Description

KRP1Calcium-binding protein KRP1 [Source:UniProtKB/Swiss-Prot;Acc:O81831]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.