Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- plasma membrane 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr5P02480_001 | |
| GSMUA_Achr7P01120_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G54490.1 | GSMUA_Achr5P02480_001 | AT2G34650.1 | 12857841 |
| AT5G54490.1 | GSMUA_Achr7P01120_001 | AT2G34650.1 | 12857841 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr3P23000_001 | Banana | cytosol | 68.64 | 76.42 |
| VIT_12s0134g00240.t01 | Wine grape | cytosol | 60.17 | 61.21 |
| GSMUA_Achr7P27110_001 | Banana | cytosol | 60.17 | 61.21 |
| TraesCS7A01G450400.1 | Wheat | cytosol | 63.56 | 60.0 |
| TraesCS7B01G350200.1 | Wheat | cytosol | 65.25 | 59.69 |
| Os06t0683400-02 | Rice | cytosol | 62.71 | 59.2 |
| Solyc07g053050.1.1 | Tomato | cytosol | 57.63 | 58.62 |
| EER88832 | Sorghum | cytosol | 64.41 | 58.46 |
| Zm00001d014491_P001 | Maize | cytosol | 65.25 | 58.33 |
| VIT_00s0347g00040.t01 | Wine grape | cytosol | 55.08 | 57.52 |
| KRH55440 | Soybean | cytosol | 49.15 | 57.43 |
| Solyc02g079520.1.1 | Tomato | nucleus | 55.93 | 57.39 |
| TraesCS7D01G439800.1 | Wheat | cytosol | 64.41 | 56.72 |
| Solyc07g063690.1.1 | Tomato | cytosol | 54.24 | 56.64 |
| PGSC0003DMT400064403 | Potato | cytosol | 55.93 | 56.41 |
| PGSC0003DMT400067274 | Potato | cytosol | 56.78 | 56.3 |
| GSMUA_Achr9P30020_001 | Banana | cytosol | 53.39 | 55.75 |
| KRH27149 | Soybean | cytosol | 54.24 | 55.65 |
| Solyc03g006710.1.1 | Tomato | cytosol | 54.24 | 55.65 |
| PGSC0003DMT400057519 | Potato | cytosol | 54.24 | 55.65 |
| KRH22182 | Soybean | cytosol | 54.24 | 55.17 |
| PGSC0003DMT400049542 | Potato | cytosol | 52.54 | 54.87 |
| VIT_19s0014g03970.t01 | Wine grape | cytosol | 50.0 | 54.63 |
| KRH26016 | Soybean | cytosol | 50.85 | 54.05 |
| PGSC0003DMT400012996 | Potato | cytosol | 52.54 | 53.91 |
| VIT_02s0012g00640.t01 | Wine grape | cytosol | 50.85 | 53.57 |
| KRH25972 | Soybean | cytosol | 53.39 | 52.94 |
| KRH55477 | Soybean | cytosol | 53.39 | 52.94 |
| GSMUA_Achr8P01460_001 | Banana | cytosol | 50.0 | 52.68 |
| KRH21601 | Soybean | cytosol | 50.85 | 52.63 |
| KRH10720 | Soybean | cytosol | 50.85 | 52.63 |
| Solyc10g006700.1.1 | Tomato | cytosol | 54.24 | 52.46 |
| PGSC0003DMT400064404 | Potato | cytosol | 54.24 | 52.46 |
| PGSC0003DMT400064349 | Potato | cytosol | 51.69 | 51.69 |
| VIT_02s0012g00650.t01 | Wine grape | cytosol | 48.31 | 51.35 |
| Solyc10g006660.2.1 | Tomato | cytosol | 55.93 | 51.16 |
| Solyc02g079720.1.1 | Tomato | cytosol | 45.76 | 50.47 |
| CDY29293 | Canola | cytosol | 53.39 | 49.61 |
| AT4G27280.1 | Thale cress | cytosol | 54.24 | 49.23 |
| KRH25447 | Soybean | cytosol | 52.54 | 49.21 |
| KRH22173 | Soybean | cytosol | 50.85 | 48.39 |
| KRH26856 | Soybean | cytosol | 50.0 | 48.36 |
| AT5G54490.1 | Thale cress | cytosol | 51.69 | 48.03 |
| KRH27151 | Soybean | cytosol | 49.15 | 47.54 |
| VIT_02s0012g00660.t01 | Wine grape | cytosol | 48.31 | 47.5 |
| Bra022723.1-P | Field mustard | cytosol | 52.54 | 47.33 |
| KRH22491 | Soybean | cytosol | 48.31 | 46.72 |
| CDY28767 | Canola | cytosol | 51.69 | 46.56 |
| CDY48640 | Canola | cytosol | 51.69 | 46.56 |
| PGSC0003DMT400036057 | Potato | cytosol | 44.92 | 46.09 |
| CDY42456 | Canola | cytosol | 50.85 | 45.8 |
| Bra002984.1-P | Field mustard | cytosol | 50.85 | 45.8 |
| CDY61745 | Canola | cytosol | 50.85 | 45.8 |
| VIT_19s0014g04650.t01 | Wine grape | cytosol | 57.63 | 45.33 |
| GSMUA_Achr1P03980_001 | Banana | cytosol | 43.22 | 41.13 |
| Solyc10g006740.2.1 | Tomato | extracellular | 50.0 | 40.41 |
| HORVU7Hr1G101740.2 | Barley | cytosol, plastid | 50.0 | 36.65 |
| CDX89262 | Canola | cytosol, peroxisome, plastid | 53.39 | 23.16 |
| Bra026364.1-P | Field mustard | cytosol | 52.54 | 21.23 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr5P26360_001 | EnsemblPlants:GSMUA_Achr5T26360_001 | EnsemblPlantsGene:GSMUA_Achr5G26360_001 | Gene3D:1.10.238.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005509 | InterPro:EF-hand-dom_pair | InterPro:EF_Hand_1_Ca_BS | InterPro:EF_hand_dom | InterPro:IPR002048 | PANTHER:PTHR44180 |
| PFAM:PF13833 | PFscan:PS50222 | ScanProsite:PS00018 | SEG:seg | SMART:SM00054 | SUPFAM:SSF47473 |
| UniParc:UPI0002949C93 | UniProt:M0T1W1 | MapMan:35.1 | : | : | : |
Description
EF hand family protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr5G26360_001]
Coordinates
chr5:-:27195430..27196009
Molecular Weight (calculated)
13471.3 Da
IEP (calculated)
4.340
GRAVY (calculated)
-0.358
Length
118 amino acids
Sequence
(BLAST)
(BLAST)
001: MARRPVEFED FLPLMADKLG EDGLMEELCN GFRLLMDPRR RLITFDSLKR NAGLLGLDGL RDDELRAMLR EGDTDGDGAL NQWEFCVLMV RLSPQLMEAP
101: RRWMDQTSGE AFGPGFMS
101: RRWMDQTSGE AFGPGFMS
001: MEPTEKSMLL ETTSTTKMET KYEDMLPVMA EKMDVEEFVS ELCKGFSLLA DPERHLITAE SLRRNSGILG IEGMSKEDAQ GMVREGDLDG DGALNQTEFC
101: VLMVRLSPEM MEDAETWLEK ALTQELCNHN LSSMP
101: VLMVRLSPEM MEDAETWLEK ALTQELCNHN LSSMP
Arabidopsis Description
KICCalcium-binding protein KIC [Source:UniProtKB/Swiss-Prot;Acc:Q9ZPX9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.