Factsheet for GSMUA_Achr1P03980_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
plasma membrane 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr8P01570_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G46600.1	GSMUA_Achr8P01570_001	AT4G20780.1	19720824

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra004524.1-P	Field mustard	cytosol	58.06	66.06
CDX80031	Canola	cytosol	58.06	66.06
TraesCSU01G118100.1	Wheat	cytosol	63.71	62.7
KRH47865	Soybean	cytosol	62.9	62.4
KRH06431	Soybean	cytosol	62.9	62.4
PGSC0003DMT400048609	Potato	cytosol	61.29	62.3
Solyc10g009340.1.1	Tomato	cytosol	61.29	61.79
TraesCS6A01G065900.1	Wheat	cytosol	62.1	61.6
VIT_15s0046g00070.t01	Wine grape	cytosol	62.9	61.42
KRH68937	Soybean	cytosol	62.1	61.11
Bra000430.1-P	Field mustard	cytosol	58.06	61.02
TraesCS6B01G088900.1	Wheat	cytosol	61.29	60.8
KRG97213	Soybean	cytosol	61.29	60.32
CDY27313	Canola	cytosol	61.29	57.14
HORVU6Hr1G011970.2	Barley	cytosol	62.1	56.62
CDY13397	Canola	cytosol	60.48	56.39
Bra039271.1-P	Field mustard	cytosol	60.48	56.39
CDY61726	Canola	cytosol	60.48	56.39
CDX95707	Canola	cytosol	60.48	55.97
AT2G46600.1	Thale cress	cytosol	60.48	55.56
CDX83356	Canola	cytosol	59.68	55.22
Os02t0122600-00	Rice	cytosol	63.71	53.74
GSMUA_Achr3P23000_001	Banana	cytosol	43.55	50.94
GSMUA_Achr9P30020_001	Banana	cytosol	45.97	50.44
GSMUA_Achr8P01460_001	Banana	cytosol	45.16	50.0
GSMUA_Achr7P27110_001	Banana	cytosol	46.77	50.0
CDY41540	Canola	cytosol	54.84	46.58
Zm00001d053926_P001	Maize	cytosol	62.1	46.11
GSMUA_Achr5P26360_001	Banana	cytosol	41.13	43.22

Protein Annotations

Gene3D:1.10.238.10	MapMan:35.1	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	GO:GO:0003674
GO:GO:0005488	GO:GO:0005509	GO:GO:0008150	GO:GO:0009653	GO:GO:0009987	GO:GO:0010091
GO:GO:0016043	GO:GO:0030154	EnsemblPlantsGene:GSMUA_Achr1G03980_001	EnsemblPlants:GSMUA_Achr1P03980_001	EnsemblPlants:GSMUA_Achr1T03980_001	InterPro:IPR002048
UniProt:M0RWV6	PFAM:PF13833	ScanProsite:PS00018	PFscan:PS50222	PANTHER:PTHR44180	PANTHER:PTHR44180:SF7
SUPFAM:SSF47473	UniParc:UPI0002950495	:	:	:	:

Description

EF hand family protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr1G03980_001]

Coordinates

chr1:+:3312128..3312669

Molecular Weight (calculated)

13577.2 Da

IEP (calculated)

3.979

GRAVY (calculated)

-0.237

Length

124 amino acids

Sequence
(BLAST)

001: MEEEKHAAAT ESEEYEDLLP VMAERLEAEQ FVSELCGGFR LLAEPGRGVI TPESLRRNAA ALGMAGMTAE DAAAMVREGD MDGDGALDEK EFCVLMVRLS
101: PEMMADAEAW LEKAIEREVL RPTA

Best Arabidopsis Sequence Match ( AT2G46600.1 )
(BLAST)

001: MEPTEKSMLL ETTSTTKMET KYEDMLPVMA EKMDVEEFVS ELCKGFSLLA DPERHLITAE SLRRNSGILG IEGMSKEDAQ GMVREGDLDG DGALNQTEFC
101: VLMVRLSPEM MEDAETWLEK ALTQELCNHN LSSMP

Arabidopsis Description

KICCalcium-binding protein KIC [Source:UniProtKB/Swiss-Prot;Acc:Q9ZPX9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.