Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- plasma membrane 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400071219 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G46600.1 | PGSC0003DMT400071219 | AT4G20780.1 | 19720824 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc10g009340.1.1 | Tomato | cytosol | 95.9 | 95.12 |
| Bra004524.1-P | Field mustard | cytosol | 63.93 | 71.56 |
| CDX80031 | Canola | cytosol | 63.93 | 71.56 |
| KRH47865 | Soybean | cytosol | 71.31 | 69.6 |
| KRH06431 | Soybean | cytosol | 70.49 | 68.8 |
| VIT_15s0046g00070.t01 | Wine grape | cytosol | 70.49 | 67.72 |
| KRH68937 | Soybean | cytosol | 68.03 | 65.87 |
| KRG97213 | Soybean | cytosol | 67.21 | 65.08 |
| Bra000430.1-P | Field mustard | cytosol | 59.84 | 61.86 |
| GSMUA_Achr1P03980_001 | Banana | cytosol | 62.3 | 61.29 |
| CDY61726 | Canola | cytosol | 64.75 | 59.4 |
| Bra039271.1-P | Field mustard | cytosol | 64.75 | 59.4 |
| CDY13397 | Canola | cytosol | 64.75 | 59.4 |
| AT2G46600.1 | Thale cress | cytosol | 65.57 | 59.26 |
| CDY27313 | Canola | cytosol | 63.93 | 58.65 |
| CDX83356 | Canola | cytosol | 61.48 | 55.97 |
| CDX95707 | Canola | cytosol | 59.84 | 54.48 |
| TraesCS6A01G065900.1 | Wheat | cytosol | 50.82 | 49.6 |
| PGSC0003DMT400064403 | Potato | cytosol | 47.54 | 49.57 |
| CDY41540 | Canola | cytosol | 59.02 | 49.32 |
| TraesCS6B01G088900.1 | Wheat | cytosol | 50.0 | 48.8 |
| TraesCSU01G118100.1 | Wheat | cytosol | 50.0 | 48.41 |
| PGSC0003DMT400064404 | Potato | cytosol | 47.54 | 47.54 |
| PGSC0003DMT400067274 | Potato | cytosol | 45.08 | 46.22 |
| PGSC0003DMT400012996 | Potato | cytosol | 42.62 | 45.22 |
| PGSC0003DMT400036057 | Potato | cytosol | 42.62 | 45.22 |
| HORVU6Hr1G011970.2 | Barley | cytosol | 50.0 | 44.85 |
| PGSC0003DMT400049542 | Potato | cytosol | 40.16 | 43.36 |
| Os02t0122600-00 | Rice | cytosol | 50.82 | 42.18 |
| PGSC0003DMT400057519 | Potato | cytosol | 39.34 | 41.74 |
| PGSC0003DMT400064349 | Potato | cytosol | 38.52 | 39.83 |
| Zm00001d053926_P001 | Maize | cytosol | 50.82 | 37.13 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400048609 | EnsemblPlantsGene:PGSC0003DMG400018884 | EntrezGene:102599234 | Gene3D:1.10.238.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005509 | InterPro:EF-hand-dom_pair | InterPro:EF_Hand_1_Ca_BS | InterPro:EF_hand_dom | InterPro:IPR002048 | PANTHER:PTHR44180 |
| PANTHER:PTHR44180:SF7 | PFAM:PF13833 | PFscan:PS50222 | PGSC:PGSC0003DMG400018884 | RefSeq:XP_006362130.1 | ScanProsite:PS00018 |
| SUPFAM:SSF47473 | UniParc:UPI0002967F0C | UniProt:M1BMN3 | MapMan:35.1 | : | : |
Description
Ccd1 [Source:PGSC_GENE;Acc:PGSC0003DMG400018884]
Coordinates
chr10:-:5184582..5185572
Molecular Weight (calculated)
13520.2 Da
IEP (calculated)
3.944
GRAVY (calculated)
-0.193
Length
122 amino acids
Sequence
(BLAST)
(BLAST)
001: MENYKVCEAT TEYQDLLPVM AEKLDVEAFV AELCGGFRLL ADPKNGLITS ASLQKNSGFL GMEEMSREDA EAMVKEGDLD GDGALNETEF CILMVRLSPE
101: MMQDAEVWLD KALQRELAKS SC
101: MMQDAEVWLD KALQRELAKS SC
001: MEPTEKSMLL ETTSTTKMET KYEDMLPVMA EKMDVEEFVS ELCKGFSLLA DPERHLITAE SLRRNSGILG IEGMSKEDAQ GMVREGDLDG DGALNQTEFC
101: VLMVRLSPEM MEDAETWLEK ALTQELCNHN LSSMP
101: VLMVRLSPEM MEDAETWLEK ALTQELCNHN LSSMP
Arabidopsis Description
KICCalcium-binding protein KIC [Source:UniProtKB/Swiss-Prot;Acc:Q9ZPX9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.