Factsheet for Zm00001d053926_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d007181_P001
Zm00001d022430_P001
Zm00001d029028_P001
Zm00001d047535_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G46600.1	Zm00001d007181_P001	AT4G20780.1	19720824
AT2G46600.1	Zm00001d022430_P001	AT4G20780.1	19720824
AT2G46600.1	Zm00001d029028_P001	AT4G20780.1	19720824
AT2G46600.1	Zm00001d047535_P001	AT4G20780.1	19720824

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCSU01G118100.1	Wheat	cytosol	52.1	69.05
TraesCS6A01G065900.1	Wheat	cytosol	50.3	67.2
TraesCS6B01G088900.1	Wheat	cytosol	49.7	66.4
HORVU6Hr1G011970.2	Barley	cytosol	50.9	62.5
GSMUA_Achr1P03980_001	Banana	cytosol	46.11	62.1
Os02t0122600-00	Rice	cytosol	52.69	59.86
VIT_15s0046g00070.t01	Wine grape	cytosol	40.72	53.54
Bra004524.1-P	Field mustard	cytosol	34.13	52.29
CDX80031	Canola	cytosol	34.13	52.29
Bra000430.1-P	Field mustard	cytosol	36.53	51.69
KRH06431	Soybean	cytosol	38.32	51.2
KRH47865	Soybean	cytosol	38.32	51.2
PGSC0003DMT400048609	Potato	cytosol	37.13	50.82
KRH68937	Soybean	cytosol	38.32	50.79
Zm00001d014491_P001	Maize	cytosol	40.12	50.76
KRG97213	Soybean	cytosol	37.72	50.0
Solyc10g009340.1.1	Tomato	cytosol	36.53	49.59
Zm00001d043258_P001	Maize	cytosol	26.35	47.31
CDX95707	Canola	cytosol	37.72	47.01
CDX83356	Canola	cytosol	37.72	47.01
CDY61726	Canola	cytosol	37.13	46.62
CDY27313	Canola	cytosol	37.13	46.62
CDY13397	Canola	cytosol	37.13	46.62
Bra039271.1-P	Field mustard	cytosol	37.13	46.62
AT2G46600.1	Thale cress	cytosol	36.53	45.19
Zm00001d031419_P001	Maize	cytosol	26.95	40.91
CDY41540	Canola	cytosol	32.93	37.67

Protein Annotations

Gene3D:1.10.238.10	EntrezGene:100281922	MapMan:35.1	ProteinID:AQK60746.1	UniProt:B6T0B8	InterPro:EF-hand-dom_pair
InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	EMBL:EU958433	GO:GO:0003674	GO:GO:0005488	GO:GO:0005509
GO:GO:0008150	GO:GO:0009653	GO:GO:0009987	GO:GO:0010091	GO:GO:0016043	GO:GO:0030154
InterPro:IPR002048	PFAM:PF13833	ScanProsite:PS00018	PFscan:PS50222	PANTHER:PTHR44180	PANTHER:PTHR44180:SF7
SUPFAM:SSF47473	UniParc:UPI000182C096	EnsemblPlantsGene:Zm00001d053926	EnsemblPlants:Zm00001d053926_P001	EnsemblPlants:Zm00001d053926_T001	SEG:seg

Description

EF-hand Ca2+-binding protein CCD1

Coordinates

chr4:-:243692664..243693167

Molecular Weight (calculated)

16764.7 Da

IEP (calculated)

4.227

GRAVY (calculated)

0.049

Length

167 amino acids

Sequence
(BLAST)

001: MAASASRARA GAGGAGEEYE DLLPVMGERL GVAGLLAELR AGFRLLADRE RGAITPDSLR RGAAAALGVA GMAHADAAAM VREGDADGDG ALSEAEFCVL
101: MVRLSPGIMA HAEAWLADAI AADEMQLVDD AMPMDAAAAD DYGGAGSRGH AAAAPDSDTA PARRSSV

Best Arabidopsis Sequence Match ( AT2G46600.1 )
(BLAST)

001: MEPTEKSMLL ETTSTTKMET KYEDMLPVMA EKMDVEEFVS ELCKGFSLLA DPERHLITAE SLRRNSGILG IEGMSKEDAQ GMVREGDLDG DGALNQTEFC
101: VLMVRLSPEM MEDAETWLEK ALTQELCNHN LSSMP

Arabidopsis Description

KICCalcium-binding protein KIC [Source:UniProtKB/Swiss-Prot;Acc:Q9ZPX9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.