Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 6
- cytosol 2
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d053926_P001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G20780.1 | Zm00001d053926_P001 | AT2G46600.1 | 19720824 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d029028_P001 | Maize | plastid | 86.1 | 85.64 |
| KXG39446 | Sorghum | plastid | 84.49 | 82.72 |
| EER92319 | Sorghum | cytosol | 81.28 | 80.85 |
| Os03t0331700-02 | Rice | plasma membrane | 80.75 | 79.47 |
| TraesCS4B01G172400.1 | Wheat | plastid | 78.07 | 77.25 |
| TraesCS4A01G132300.1 | Wheat | plastid | 78.61 | 76.96 |
| TraesCS4D01G174400.1 | Wheat | plastid | 77.54 | 76.72 |
| HORVU4Hr1G050990.1 | Barley | plastid | 79.14 | 76.68 |
| Zm00001d022430_P001 | Maize | cytosol, plastid | 68.45 | 64.0 |
| GSMUA_Achr8P01570_001 | Banana | cytosol | 63.1 | 63.78 |
| Zm00001d007181_P001 | Maize | plastid | 67.91 | 62.56 |
| AT5G44460.1 | Thale cress | cytosol | 54.01 | 55.8 |
| Bra033745.1-P | Field mustard | cytosol | 52.41 | 53.85 |
| CDY14927 | Canola | cytosol | 51.87 | 53.3 |
| CDY49013 | Canola | cytosol | 51.87 | 53.3 |
| CDX94789 | Canola | cytosol | 51.87 | 53.3 |
| Bra039511.1-P | Field mustard | cytosol | 51.87 | 53.3 |
| CDX94006 | Canola | cytosol | 52.94 | 53.23 |
| Bra013470.1-P | Field mustard | cytosol | 52.94 | 52.66 |
| CDX79002 | Canola | cytosol | 52.94 | 52.66 |
| VIT_08s0056g00290.t01 | Wine grape | cytosol, mitochondrion | 54.01 | 52.6 |
| CDY31433 | Canola | cytosol, plastid | 50.8 | 51.63 |
| CDX82773 | Canola | cytosol | 52.41 | 51.31 |
| AT4G20780.1 | Thale cress | cytosol | 52.41 | 51.31 |
| CDX76451 | Canola | cytosol, plastid | 50.27 | 51.09 |
| Bra020916.1-P | Field mustard | cytosol, plastid | 50.27 | 51.09 |
| CDX96968 | Canola | cytosol | 51.34 | 49.74 |
| KRH40630 | Soybean | mitochondrion | 47.59 | 48.63 |
| Solyc10g074740.1.1 | Tomato | cytosol, plastid | 51.34 | 48.24 |
| PGSC0003DMT400071219 | Potato | cytosol, plastid | 50.27 | 47.24 |
| Zm00001d023992_P001 | Maize | cytosol | 33.69 | 39.62 |
| CDX98672 | Canola | cytosol | 53.48 | 39.37 |
| Bra038801.1-P | Field mustard | cytosol | 53.48 | 38.31 |
| Zm00001d042107_P001 | Maize | mitochondrion | 32.62 | 31.44 |
| Zm00001d003197_P001 | Maize | plastid | 35.83 | 30.18 |
| Zm00001d009985_P001 | Maize | cytosol, mitochondrion, plastid | 29.95 | 29.63 |
| Zm00001d038061_P001 | Maize | mitochondrion | 30.48 | 27.94 |
| Zm00001d020722_P001 | Maize | cytosol, mitochondrion | 25.67 | 26.09 |
| Zm00001d037477_P001 | Maize | endoplasmic reticulum, vacuole | 32.09 | 24.69 |
| Zm00001d008573_P001 | Maize | plastid | 26.74 | 24.39 |
| Zm00001d004972_P001 | Maize | plastid | 24.06 | 24.06 |
| Zm00001d042108_P001 | Maize | cytosol, plastid | 24.6 | 23.96 |
| Zm00001d039944_P001 | Maize | cytosol, plastid | 23.53 | 22.56 |
Protein Annotations
| Gene3D:1.10.238.10 | MapMan:35.1 | UniProt:A0A1D6PB15 | ProteinID:AQL06873.1 | InterPro:EF-hand-dom_pair | InterPro:EF_Hand_1_Ca_BS |
| InterPro:EF_hand_dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005509 | InterPro:IPR002048 | PFAM:PF13405 |
| PFAM:PF13499 | ScanProsite:PS00018 | PFscan:PS50222 | PANTHER:PTHR45003 | PANTHER:PTHR45003:SF1 | SMART:SM00054 |
| SUPFAM:SSF47473 | UniParc:UPI000843EDAF | EnsemblPlantsGene:Zm00001d047535 | EnsemblPlants:Zm00001d047535_P001 | EnsemblPlants:Zm00001d047535_T001 | SEG:seg |
Description
Calcium-binding protein CML42
Coordinates
chr9:+:134086410..134087372
Molecular Weight (calculated)
20245.2 Da
IEP (calculated)
4.264
GRAVY (calculated)
-0.073
Length
187 amino acids
Sequence
(BLAST)
(BLAST)
001: MESAAPVIAR PSLPKKPSPS FRLRNGSLNV LRLRRVFDLF DRNGDGEITL DEMAAALDAL GLGADRPGLQ AAVGAYIPAG AAGLRFDDFQ SLHRALGDAL
101: FGPIPETVPE EDVEGDMEEA FRVFDEDGDG FISAAELQAV LRKLGLSEAR NLATVQEMIC SVDSNCDGRV DFREFKNMMM QGVTVLI
101: FGPIPETVPE EDVEGDMEEA FRVFDEDGDG FISAAELQAV LRKLGLSEAR NLATVQEMIC SVDSNCDGRV DFREFKNMMM QGVTVLI
001: MEINNEKKKL SRQSSSFRLR SPSLNALRLH RVFDLFDKNN DGFITVEELS QALSRLGLDA DFSDLKSTVD SFIKPDKTGL RFDDFAALHK TLDESFFGGE
101: GSCCDGSPES DLEEAFNVFD EDGDGFISAV ELQKVLKKLG LPEAGEIEQV EKMIVSVDSN HDGRVDFFEF KNMMQTVVVP S
101: GSCCDGSPES DLEEAFNVFD EDGDGFISAV ELQKVLKKLG LPEAGEIEQV EKMIVSVDSN HDGRVDFFEF KNMMQTVVVP S
Arabidopsis Description
CML43Probable calcium-binding protein CML43 [Source:UniProtKB/Swiss-Prot;Acc:Q9FI19]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.