Factsheet for Zm00001d042108_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 2
mitochondrion 3
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d004494_P001
Zm00001d006366_P001
Zm00001d008930_P003
Zm00001d009724_P009
Zm00001d011352_P001
Zm00001d033961_P001
Zm00001d039362_P002
Zm00001d044479_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G41410.1	Zm00001d004494_P001	AT2G42580.1	19000166
AT2G41410.1	Zm00001d006366_P001	AT2G42580.1	19000166
AT2G41410.1	Zm00001d008930_P003	AT2G42580.1	19000166
AT2G41410.1	Zm00001d009724_P009	AT2G42580.1	19000166
AT2G41410.1	Zm00001d011352_P001	AT2G42580.1	19000166
AT2G41410.1	Zm00001d033961_P001	AT2G42580.1	19000166
AT2G41410.1	Zm00001d039362_P002	AT2G42580.1	19000166
AT2G41410.1	Zm00001d044479_P001	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES02048	Sorghum	plastid	81.25	81.68
TraesCS3A01G488700.1	Wheat	nucleus, plastid	68.75	68.75
TraesCS3D01G484600.1	Wheat	cytosol, plastid	68.75	67.69
TraesCS3B01G536600.1	Wheat	nucleus, plastid	67.71	65.99
Os01t0949300-01	Rice	plasma membrane	68.23	64.22
HORVU3Hr1G106950.3	Barley	cytosol	66.67	47.41
Zm00001d004972_P001	Maize	plastid	43.23	44.38
GSMUA_Achr8P09680_001	Banana	plastid	42.19	40.1
KRH66816	Soybean	plastid	39.58	34.7
KRG95139	Soybean	plastid	39.06	34.4
Bra016936.1-P	Field mustard	cytosol	18.75	34.29
CDY23852	Canola	cytosol, mitochondrion, plastid	38.02	34.27
CDX79938	Canola	cytosol, mitochondrion, plastid	37.5	33.8
Bra004620.1-P	Field mustard	cytosol, mitochondrion, plastid	37.5	33.8
PGSC0003DMT400021079	Potato	cytosol, mitochondrion, plastid	35.94	33.66
Solyc10g079420.1.1	Tomato	nucleus, plastid	35.94	33.66
PGSC0003DMT400076709	Potato	mitochondrion	36.98	33.65
VIT_08s0007g05790.t01	Wine grape	mitochondrion, plastid	37.5	32.43
CDY06925	Canola	cytosol, mitochondrion, plastid	36.46	32.26
CDY14768	Canola	cytosol, mitochondrion, plastid	35.94	31.8
AT3G10190.1	Thale cress	cytosol, mitochondrion	34.38	31.58
AT2G41410.1	Thale cress	cytosol, mitochondrion, plastid	35.42	31.48
Zm00001d023992_P001	Maize	cytosol	25.52	30.82
CDY60169	Canola	cytosol, plastid	33.33	30.77
Bra029821.1-P	Field mustard	plastid	32.81	30.29
PGSC0003DMT400027581	Potato	cytosol, plastid	33.33	29.63
CDY00910	Canola	cytosol, plastid	33.33	29.36
Zm00001d042107_P001	Maize	mitochondrion	29.17	28.87
Zm00001d009985_P001	Maize	cytosol, mitochondrion, plastid	28.12	28.57
Zm00001d008573_P001	Maize	plastid	30.21	28.29
Zm00001d020722_P001	Maize	cytosol, mitochondrion	27.08	28.26
Solyc04g018110.1.1	Tomato	plastid	34.9	27.69
Zm00001d029028_P001	Maize	plastid	26.04	26.6
Zm00001d038061_P001	Maize	mitochondrion	27.6	25.98
Zm00001d003197_P001	Maize	plastid	29.17	25.23
Zm00001d022430_P001	Maize	cytosol, plastid	26.04	25.0
Zm00001d047535_P001	Maize	plastid	23.96	24.6
Zm00001d007181_P001	Maize	plastid	25.0	23.65
Zm00001d039944_P001	Maize	cytosol, plastid	23.44	23.08
Zm00001d037477_P001	Maize	endoplasmic reticulum, vacuole	28.12	22.22

Protein Annotations

Gene3D:1.10.238.10	EntrezGene:100283599	MapMan:35.2	EMBL:BT084186	UniProt:C4J039	InterPro:EF-hand-dom_pair
InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005509	InterPro:IPR002048
ProteinID:ONM34556.1	PFAM:PF13499	ScanProsite:PS00018	PFscan:PS50222	PANTHER:PTHR10891	PANTHER:PTHR10891:SF739
SMART:SM00054	SUPFAM:SSF47473	UniParc:UPI0001A4C627	EnsemblPlantsGene:Zm00001d042108	EnsemblPlants:Zm00001d042108_P001	EnsemblPlants:Zm00001d042108_T001
SEG:seg	:	:	:	:	:

Description

Probable calcium-binding protein CML36

Coordinates

chr3:-:150865319..150865897

Molecular Weight (calculated)

19812.3 Da

IEP (calculated)

4.778

GRAVY (calculated)

-0.223

Length

192 amino acids

Sequence
(BLAST)

001: MKLSIQSLAR KLSLPSPKRG GGGIVEDGKK KKKRSLSRGE APSFASSSSS SSSSSATTTP RSVLAAAPAP ALEIPRRELE AVLRRLGHAE PSDAELDAVA
101: ALAAQPPPCD ADADADGDLM EAFRVFDADG DGRITAEELR AVLDAVLGGG CSLDDCRRMI GGVDADGDGF VGFQDFARMM MASAGTADAR AF

Best Arabidopsis Sequence Match ( AT3G10190.1 )
(BLAST)

001: MKLAKLIPKR FFIRSKDRST VSKSPTAFSF GSASSSSGQD CKNSGGDGGG GSVTPTSILP EVPSPYSYVE ILQAFKLIDR DNDGAVSRHD LESLLSRLGP
101: DPLTEEEINV MLKEVDCDGD GTIRLEELAS RVVSLDPARD STELKETFEF FDADRDGLIS ADELLRVFST IGDERCTLDD CKRMIADVDE DGDGFVCFTE
201: FSRMMDLQR

Arabidopsis Description

CML36Probable calcium-binding protein CML36 [Source:UniProtKB/Swiss-Prot;Acc:Q9SS31]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.