CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, cytosol

Predictor Summary:

plastid 3
mitochondrion 4
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY42827
CDY51514
CDY55390
CDY61202

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G41410.1	CDY42827	AT2G42580.1	19000166
AT2G41410.1	CDY51514	AT2G42580.1	19000166
AT2G41410.1	CDY55390	AT2G42580.1	19000166
AT2G41410.1	CDY61202	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra016936.1-P	Field mustard	cytosol	47.0	97.14
CDY14768	Canola	cytosol, mitochondrion, plastid	95.39	95.39
CDY23852	Canola	cytosol, mitochondrion, plastid	79.72	81.22
CDX79938	Canola	cytosol, mitochondrion, plastid	77.88	79.34
AT2G41410.1	Thale cress	cytosol, mitochondrion, plastid	76.96	77.31
KRG95139	Soybean	plastid	55.3	55.05
KRH66816	Soybean	plastid	54.38	53.88
CDY60169	Canola	cytosol, plastid	51.15	53.37
VIT_08s0007g05790.t01	Wine grape	mitochondrion, plastid	53.46	52.25
Solyc10g079420.1.1	Tomato	nucleus, plastid	48.39	51.22
PGSC0003DMT400021079	Potato	cytosol, mitochondrion, plastid	47.93	50.73
CDY00910	Canola	cytosol, plastid	50.69	50.46
PGSC0003DMT400076709	Potato	mitochondrion	47.0	48.34
TraesCS5B01G134200.1	Wheat	cytosol	19.82	47.78
PGSC0003DMT400027581	Potato	cytosol, plastid	45.16	45.37
GSMUA_Achr8P09680_001	Banana	plastid	39.63	42.57
Solyc04g018110.1.1	Tomato	plastid	47.0	42.15
Os11t0141400-01	Rice	cytosol	34.56	39.89
EES16521	Sorghum	plastid	38.25	38.78
TraesCS3A01G488700.1	Wheat	nucleus, plastid	33.64	38.02
TraesCS3D01G484600.1	Wheat	cytosol, plastid	33.64	37.44
TraesCS5D01G141900.1	Wheat	plastid	31.34	37.16
TraesCS3B01G536600.1	Wheat	nucleus, plastid	33.64	37.06
HORVU5Hr1G043460.1	Barley	plastid	30.88	36.61
Zm00001d042108_P001	Maize	cytosol, plastid	32.26	36.46
Zm00001d004972_P001	Maize	plastid	31.34	36.36
KXG27695	Sorghum	plastid	32.72	36.04
Os01t0949300-01	Rice	plasma membrane	33.64	35.78
EES02048	Sorghum	plastid	31.34	35.6
CDX96150	Canola	cytosol	24.88	35.29
CDY55679	Canola	cytosol	24.42	34.64
CDY27652	Canola	cytosol	25.35	34.59
CDX99691	Canola	cytosol	24.88	34.18
Os12t0138050-00	Rice	plastid	36.87	33.61
CDY60818	Canola	cytosol	23.04	33.56
CDY22119	Canola	cytosol	23.04	32.89
CDY63788	Canola	cytosol	22.58	32.45
CDX86544	Canola	cytosol	22.58	32.45
CDY21953	Canola	cytosol	22.58	32.24
CDX90890	Canola	cytosol	22.58	31.82
CDY03874	Canola	cytosol	26.73	31.52
CDY40786	Canola	cytosol	26.73	31.52
CDY07993	Canola	cytosol	22.12	31.37
CDY33702	Canola	cytosol	21.66	30.92
CDY39714	Canola	cytosol	21.66	30.92
CDX96488	Canola	cytosol	22.58	30.82
CDX72996	Canola	cytosol	22.58	30.82
CDX74043	Canola	cytosol	21.66	30.72
CDY37233	Canola	plastid	26.73	30.69
CDY66855	Canola	plastid	26.73	30.69
CDX84967	Canola	cytosol	25.81	29.63
GSMUA_Achr8P00110_001	Banana	endoplasmic reticulum, golgi	39.17	29.51
CDY70127	Canola	cytosol	22.58	29.34
CDY27574	Canola	cytosol	25.81	29.32
CDX96729	Canola	cytosol	23.5	29.31
CDY23356	Canola	vacuole	28.11	28.91
CDY36129	Canola	cytosol	24.88	28.88
CDY30399	Canola	extracellular	27.65	28.57
CDY19196	Canola	cytosol	23.04	28.25
CDX83860	Canola	cytosol	23.04	28.25
CDY17950	Canola	cytosol	21.2	27.71
CDX67796	Canola	vacuole	25.35	27.09
CDX98375	Canola	endoplasmic reticulum	25.35	26.96
HORVU3Hr1G106950.3	Barley	cytosol	33.18	26.67
CDX83488	Canola	extracellular	26.27	26.64
CDY72611	Canola	extracellular, vacuole	23.96	26.0
CDY49013	Canola	cytosol	21.66	25.82
CDX94789	Canola	cytosol	21.66	25.82
CDY14927	Canola	cytosol	21.66	25.82
CDX94006	Canola	cytosol	22.12	25.81
CDY06002	Canola	extracellular, vacuole	23.5	25.76
CDY31433	Canola	cytosol, plastid	21.66	25.54
CDX76451	Canola	cytosol, plastid	21.66	25.54
CDX96968	Canola	cytosol	21.66	24.35
CDX79002	Canola	cytosol	20.74	23.94
CDX82773	Canola	cytosol	20.74	23.56
CDY44217	Canola	endoplasmic reticulum, golgi	26.73	20.57
CDX98672	Canola	cytosol	23.5	20.08
CDY24421	Canola	endoplasmic reticulum, golgi	24.88	19.93

Protein Annotations

EnsemblPlants:CDY06925	EnsemblPlantsGene:GSBRNA2T00123222001	Gene3D:1.10.238.10	GO:A0A078EXV8	GO:GO:0003674	GO:GO:0005488
GO:GO:0005509	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	InterPro:IPR002048	PANTHER:PTHR10891
PANTHER:PTHR10891:SF739	PFAM:PF13499	PFscan:PS50222	ProteinID:CDY06925	ProteinID:CDY06925.1	ScanProsite:PS00018
SEG:seg	SMART:SM00054	SUPFAM:SSF47473	UniParc:UPI0004EDAD4D	MapMan:35.1	:

Description

BnaA04g23900D

Coordinates

chrLK031974:+:220556..221525

Molecular Weight (calculated)

23423.1 Da

IEP (calculated)

4.158

GRAVY (calculated)

-0.335

Length

217 amino acids

Sequence
(BLAST)

001: MKLATSLSSK FLRLSPKRIF RSKSKSSSVS RSEPSSFSSG ASSDGSYSDL KPGPAATPVS VLPGGDQDFY SELIQAFKLI DRDDDGVVSR KELAALLSRL
101: SPEPPSQEEV TLMLQEVDGG GDGCISLEEL ASRVAGSSSD SDESSVEMRE VFEFFDVDHD GRISAEELHR VFGVIGDERC TLEECVRMIA TVDGNGDGFV
201: CFDDFCRMME ASGSSDE

Best Arabidopsis Sequence Match ( AT2G41410.1 )
(BLAST)

001: MKLAASLNRL SPKRLFRTKS KASVSRSEPS SFSSNASSSS SDGSYGNLKQ GPTATPISVL PQNSGDFYTE LVQAFKLIDR DDDGVVSRGD LAALISRLSH
101: EPPSQEEVSL MLREVDGGDG GCISLEDLAS RVAGTSGEGS VETEELREVF EIFDVDRNGK ISAEELHRVF GVIGDERCTL EECMRMIATV DGNGDGFVCF
201: DDFCRMMVPA MNDHHH

Arabidopsis Description

CML35Probable calcium-binding protein CML35 [Source:UniProtKB/Swiss-Prot;Acc:P30188]
SUBAcon: [mitochondrion,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.