CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra004165.1-P	Field mustard	cytosol	100.0	100.0
CDY55679	Canola	cytosol	98.69	98.69
AT1G66400.1	Thale cress	cytosol	81.05	78.98
CDY27652	Canola	cytosol	80.39	77.36
CDX99691	Canola	cytosol	79.74	77.22
KRH30955	Soybean	cytosol	54.9	61.31
KRG97926	Soybean	cytosol	53.59	58.99
KRH73006	Soybean	cytosol	51.63	56.03
VIT_14s0006g01400.t01	Wine grape	cytosol	54.9	56.0
PGSC0003DMT400026987	Potato	cytosol	52.94	55.86
Solyc02g063350.1.1	Tomato	cytosol	52.29	55.17
KRH17370	Soybean	cytosol	49.67	53.9
Solyc02g091500.1.1	Tomato	cytosol	54.25	53.21
PGSC0003DMT400078654	Potato	cytosol	53.59	52.56
CDY60818	Canola	cytosol	40.52	41.61
CDX72996	Canola	cytosol	43.14	41.51
CDX96488	Canola	cytosol	43.14	41.51
CDY33702	Canola	cytosol	40.52	40.79
CDY39714	Canola	cytosol	40.52	40.79
CDY70127	Canola	cytosol	44.44	40.72
CDX86544	Canola	cytosol	39.22	39.74
CDY63788	Canola	cytosol	39.22	39.74
CDX74043	Canola	cytosol	39.22	39.22
CDY07993	Canola	cytosol	39.22	39.22
CDY19196	Canola	cytosol	44.44	38.42
CDX96729	Canola	cytosol	43.14	37.93
CDX83860	Canola	cytosol	43.79	37.85
CDY21953	Canola	cytosol	35.95	36.18
CDY22119	Canola	cytosol	35.95	36.18
CDY03874	Canola	cytosol	43.14	35.87
CDY40786	Canola	cytosol	43.14	35.87
CDX90890	Canola	cytosol	35.95	35.71
CDY66855	Canola	plastid	43.79	35.45
CDY37233	Canola	plastid	43.79	35.45
CDX84967	Canola	cytosol	40.52	32.8
CDY36129	Canola	cytosol	39.87	32.62
CDY27574	Canola	cytosol	40.52	32.46
CDY17950	Canola	cytosol	33.99	31.33
CDY30399	Canola	extracellular	42.48	30.95
CDY06002	Canola	extracellular, vacuole	39.87	30.81
CDY23356	Canola	vacuole	42.48	30.81
CDX98375	Canola	endoplasmic reticulum	40.52	30.39
CDX83488	Canola	extracellular	42.48	30.37
CDX67796	Canola	vacuole	39.87	30.05
CDY72611	Canola	extracellular, vacuole	39.22	30.0
CDY14927	Canola	cytosol	32.68	27.47
CDY49013	Canola	cytosol	31.37	26.37
CDX94789	Canola	cytosol	31.37	26.37
CDX94006	Canola	cytosol	32.03	26.34
CDX96968	Canola	cytosol	32.68	25.91
CDX79002	Canola	cytosol	31.37	25.53
CDX76451	Canola	cytosol, plastid	30.07	25.0
CDY31433	Canola	cytosol, plastid	30.07	25.0
CDY14768	Canola	cytosol, mitochondrion, plastid	35.29	24.88
CDY06925	Canola	cytosol, mitochondrion, plastid	35.29	24.88
CDX79938	Canola	cytosol, mitochondrion, plastid	34.64	24.88
CDY23852	Canola	cytosol, mitochondrion, plastid	34.64	24.88
CDX82773	Canola	cytosol	30.72	24.61
CDY60169	Canola	cytosol, plastid	32.68	24.04
CDY00910	Canola	cytosol, plastid	33.99	23.85
CDY44217	Canola	endoplasmic reticulum, golgi	41.83	22.7
CDY24421	Canola	endoplasmic reticulum, golgi	39.87	22.51
CDX98672	Canola	cytosol	33.33	20.08

Protein Annotations

EnsemblPlants:CDX96150	EnsemblPlantsGene:GSBRNA2T00102208001	Gene3D:1.10.238.10	GO:A0A078E2M5	GO:GO:0003674	GO:GO:0005488
GO:GO:0005509	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	InterPro:IPR002048	PANTHER:PTHR10891
PANTHER:PTHR10891:SF573	PFAM:PF13499	PFscan:PS50222	ProteinID:CDX96150	ProteinID:CDX96150.1	ScanProsite:PS00018
SMART:SM00054	SUPFAM:SSF47473	UniParc:UPI00025414F9	MapMan:35.1	:	:

Description

BnaA07g25810D

Coordinates

chrLK031892:+:1323563..1325643

Molecular Weight (calculated)

17045.2 Da

IEP (calculated)

4.217

GRAVY (calculated)

-0.425

Length

153 amino acids

Sequence
(BLAST)

001: MSKSGRYCLG SMEDIRAVFQ RFDKNGDGKI SIDELKDVIG ALSPTASPEE TTLMMKEFDL DGNGYIDMDE FVALFQIEDG GDIRDLKEAF DLYDLDGNGR
101: ISVNELHSVM KNLGEKCSLE DCKRIISKVD ADGDGCVNFE EFKKMMMNGR ATA

Best Arabidopsis Sequence Match ( AT1G66400.1 )
(BLAST)

001: MSKNVSRNCL GSMEDIKKVF QRFDKNNDGK ISIDELKDVI GALSPNASQE ETKAMMKEFD LDGNGFIDLD EFVALFQISD QSSNNSAIRD LKEAFDLYDL
101: DRNGRISANE LHSVMKNLGE KCSIQDCQRM INKVDSDGDG CVDFEEFKKM MMINGSA

Arabidopsis Description

CML23Probable calcium-binding protein CML23 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8Y1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.