Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY27652 | Canola | cytosol | 99.37 | 98.74 |
| Bra025439.1-P | Field mustard | cytosol | 99.37 | 98.12 |
| AT5G37770.1 | Thale cress | cytosol | 86.71 | 85.09 |
| CDY55679 | Canola | cytosol | 77.22 | 79.74 |
| CDX96150 | Canola | cytosol | 77.22 | 79.74 |
| KRH30955 | Soybean | cytosol | 51.27 | 59.12 |
| KRG97926 | Soybean | cytosol | 51.27 | 58.27 |
| KRH73006 | Soybean | cytosol | 50.0 | 56.03 |
| PGSC0003DMT400026987 | Potato | cytosol | 51.27 | 55.86 |
| KRH17370 | Soybean | cytosol | 48.73 | 54.61 |
| Solyc02g063350.1.1 | Tomato | cytosol | 50.0 | 54.48 |
| Solyc02g091500.1.1 | Tomato | cytosol | 52.53 | 53.21 |
| VIT_14s0006g01400.t01 | Wine grape | cytosol | 50.0 | 52.67 |
| PGSC0003DMT400078654 | Potato | cytosol | 51.9 | 52.56 |
| CDY39714 | Canola | cytosol | 41.77 | 43.42 |
| CDY33702 | Canola | cytosol | 41.14 | 42.76 |
| CDX72996 | Canola | cytosol | 42.41 | 42.14 |
| CDX96488 | Canola | cytosol | 42.41 | 42.14 |
| CDX86544 | Canola | cytosol | 39.24 | 41.06 |
| CDY63788 | Canola | cytosol | 39.24 | 41.06 |
| CDY70127 | Canola | cytosol | 42.41 | 40.12 |
| CDY60818 | Canola | cytosol | 37.34 | 39.6 |
| CDY22119 | Canola | cytosol | 36.71 | 38.16 |
| CDY21953 | Canola | cytosol | 36.71 | 38.16 |
| CDY07993 | Canola | cytosol | 36.71 | 37.91 |
| CDY19196 | Canola | cytosol | 42.41 | 37.85 |
| CDX74043 | Canola | cytosol | 36.08 | 37.25 |
| CDY03874 | Canola | cytosol | 43.04 | 36.96 |
| CDY40786 | Canola | cytosol | 43.04 | 36.96 |
| CDX83860 | Canola | cytosol | 40.51 | 36.16 |
| CDY66855 | Canola | plastid | 43.04 | 35.98 |
| CDY37233 | Canola | plastid | 43.04 | 35.98 |
| CDX90890 | Canola | cytosol | 34.81 | 35.71 |
| CDX96729 | Canola | cytosol | 39.24 | 35.63 |
| CDY36129 | Canola | cytosol | 40.51 | 34.22 |
| CDX84967 | Canola | cytosol | 40.51 | 33.86 |
| CDY27574 | Canola | cytosol | 40.51 | 33.51 |
| CDY17950 | Canola | cytosol | 32.91 | 31.33 |
| CDY30399 | Canola | extracellular | 41.14 | 30.95 |
| CDY06002 | Canola | extracellular, vacuole | 38.61 | 30.81 |
| CDY23356 | Canola | vacuole | 41.14 | 30.81 |
| CDY72611 | Canola | extracellular, vacuole | 38.61 | 30.5 |
| CDX83488 | Canola | extracellular | 41.14 | 30.37 |
| CDY14927 | Canola | cytosol | 34.18 | 29.67 |
| CDX67796 | Canola | vacuole | 37.97 | 29.56 |
| CDX98375 | Canola | endoplasmic reticulum | 37.97 | 29.41 |
| CDY49013 | Canola | cytosol | 33.54 | 29.12 |
| CDX94789 | Canola | cytosol | 33.54 | 29.12 |
| CDX94006 | Canola | cytosol | 34.18 | 29.03 |
| CDX82773 | Canola | cytosol | 34.81 | 28.8 |
| CDX79002 | Canola | cytosol | 34.18 | 28.72 |
| CDX96968 | Canola | cytosol | 34.18 | 27.98 |
| CDX76451 | Canola | cytosol, plastid | 31.65 | 27.17 |
| CDY31433 | Canola | cytosol, plastid | 31.65 | 27.17 |
| CDY23852 | Canola | cytosol, mitochondrion, plastid | 35.44 | 26.29 |
| CDX79938 | Canola | cytosol, mitochondrion, plastid | 35.44 | 26.29 |
| CDY06925 | Canola | cytosol, mitochondrion, plastid | 34.18 | 24.88 |
| CDY60169 | Canola | cytosol, plastid | 32.28 | 24.52 |
| CDY14768 | Canola | cytosol, mitochondrion, plastid | 33.54 | 24.42 |
| CDY00910 | Canola | cytosol, plastid | 33.54 | 24.31 |
| CDY24421 | Canola | endoplasmic reticulum, golgi | 40.51 | 23.62 |
| CDY44217 | Canola | endoplasmic reticulum, golgi | 41.14 | 23.05 |
| CDX98672 | Canola | cytosol | 34.81 | 21.65 |
Protein Annotations
| EnsemblPlants:CDX99691 | EnsemblPlantsGene:GSBRNA2T00108256001 | Gene3D:1.10.238.10 | GO:A0A078EF00 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005509 | InterPro:EF-hand-dom_pair | InterPro:EF_Hand_1_Ca_BS | InterPro:EF_hand_dom | InterPro:IPR002048 | PANTHER:PTHR10891 |
| PANTHER:PTHR10891:SF573 | PFAM:PF13499 | PFscan:PS50222 | ProteinID:CDX99691 | ProteinID:CDX99691.1 | ScanProsite:PS00018 |
| SMART:SM00054 | SUPFAM:SSF47473 | UniParc:UPI0004EB600C | MapMan:35.1 | : | : |
Description
BnaC04g34480D
Coordinates
chrLK031912:+:1183504..1183980
Molecular Weight (calculated)
17406.6 Da
IEP (calculated)
4.639
GRAVY (calculated)
-0.559
Length
158 amino acids
Sequence
(BLAST)
(BLAST)
001: MSKSNGARSC LGSMDDIRRV FQRFDKNGDG KISVDELKEV IRALSPNASP EETVKMMKQF DLDGNGFIDM DEFVSLFQIG VNQGGGGNSK NDLKEAFELY
101: DLDGNGRISA KELHSVMKNL GEKCSVQDCR KMISKVDTDG DGCVNFEEFK LMMNNGGA
101: DLDGNGRISA KELHSVMKNL GEKCSVQDCR KMISKVDTDG DGCVNFEEFK LMMNNGGA
001: MSSKNGVVRS CLGSMDDIKK VFQRFDKNGD GKISVDELKE VIRALSPTAS PEETVTMMKQ FDLDGNGFID LDEFVALFQI GIGGGGNNRN DVSDLKEAFE
101: LYDLDGNGRI SAKELHSVMK NLGEKCSVQD CKKMISKVDI DGDGCVNFDE FKKMMSNGGG A
101: LYDLDGNGRI SAKELHSVMK NLGEKCSVQD CKKMISKVDI DGDGCVNFDE FKKMMSNGGG A
Arabidopsis Description
CML24TCH2 [Source:UniProtKB/TrEMBL;Acc:A0A178UBB8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.