Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 2
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra020916.1-P | Field mustard | cytosol, plastid | 99.46 | 99.46 |
| CDX76451 | Canola | cytosol, plastid | 99.46 | 99.46 |
| CDX94006 | Canola | cytosol | 84.24 | 83.33 |
| CDX82773 | Canola | cytosol | 83.7 | 80.63 |
| CDX79002 | Canola | cytosol | 82.07 | 80.32 |
| AT4G20780.1 | Thale cress | cytosol | 82.07 | 79.06 |
| CDX94789 | Canola | cytosol | 69.57 | 70.33 |
| CDY49013 | Canola | cytosol | 68.48 | 69.23 |
| CDY14927 | Canola | cytosol | 64.67 | 65.38 |
| CDX96968 | Canola | cytosol | 65.22 | 62.18 |
| CDX98672 | Canola | cytosol | 81.52 | 59.06 |
| Solyc10g074740.1.1 | Tomato | cytosol, plastid | 63.59 | 58.79 |
| PGSC0003DMT400071219 | Potato | cytosol, plastid | 62.5 | 57.79 |
| VIT_08s0056g00290.t01 | Wine grape | cytosol, mitochondrion | 58.15 | 55.73 |
| KRH40630 | Soybean | mitochondrion | 54.35 | 54.64 |
| GSMUA_Achr8P01570_001 | Banana | cytosol | 54.35 | 54.05 |
| Zm00001d029028_P001 | Maize | plastid | 53.26 | 52.13 |
| EER92319 | Sorghum | cytosol | 52.72 | 51.6 |
| KXG39446 | Sorghum | plastid | 53.26 | 51.31 |
| Zm00001d047535_P001 | Maize | plastid | 51.63 | 50.8 |
| TraesCS4D01G174400.1 | Wheat | plastid | 51.63 | 50.26 |
| Os03t0331700-02 | Rice | plasma membrane | 51.63 | 50.0 |
| TraesCS4A01G132300.1 | Wheat | plastid | 51.09 | 49.21 |
| TraesCS4B01G172400.1 | Wheat | plastid | 50.54 | 49.21 |
| EER97743 | Sorghum | plastid | 52.72 | 48.74 |
| HORVU4Hr1G050990.1 | Barley | plastid | 51.09 | 48.7 |
| Os08t0144100-01 | Rice | plasma membrane | 51.63 | 48.47 |
| TraesCS7D01G302700.1 | Wheat | plastid | 51.63 | 48.47 |
| TraesCS7B01G206200.1 | Wheat | plastid | 51.63 | 47.98 |
| HORVU7Hr1G072770.1 | Barley | plastid | 51.63 | 47.98 |
| TraesCS7A01G306000.1 | Wheat | plastid | 51.09 | 47.96 |
| TraesCS2A01G103600.1 | Wheat | plastid | 49.46 | 47.64 |
| TraesCS2B01G120900.1 | Wheat | plastid | 49.46 | 47.64 |
| Zm00001d022430_P001 | Maize | cytosol, plastid | 51.63 | 47.5 |
| Zm00001d007181_P001 | Maize | plastid | 52.17 | 47.29 |
| TraesCS5D01G348900.1 | Wheat | cytosol | 41.85 | 47.24 |
| TraesCS2D01G103400.1 | Wheat | plastid | 48.91 | 47.12 |
| TraesCS5A01G343000.1 | Wheat | cytosol, mitochondrion | 41.85 | 46.95 |
| TraesCS5B01G342800.1 | Wheat | cytosol | 41.3 | 46.91 |
| Os07t0681400-01 | Rice | cytosol | 49.46 | 46.19 |
| HORVU5Hr1G085800.2 | Barley | cytosol | 40.76 | 42.86 |
| CDX90890 | Canola | cytosol | 34.24 | 40.91 |
| CDY60818 | Canola | cytosol | 32.61 | 40.27 |
| CDY63788 | Canola | cytosol | 32.61 | 39.74 |
| CDX86544 | Canola | cytosol | 32.61 | 39.74 |
| Os05t0312600-01 | Rice | cytosol, plastid | 42.39 | 39.59 |
| CDY22119 | Canola | cytosol | 32.07 | 38.82 |
| CDY21953 | Canola | cytosol | 32.07 | 38.82 |
| CDX74043 | Canola | cytosol | 31.52 | 37.91 |
| CDY07993 | Canola | cytosol | 31.52 | 37.91 |
| CDY17950 | Canola | cytosol | 32.07 | 35.54 |
| CDY39714 | Canola | cytosol | 29.35 | 35.53 |
| CDY33702 | Canola | cytosol | 29.35 | 35.53 |
| CDX99691 | Canola | cytosol | 27.17 | 31.65 |
| CDY27652 | Canola | cytosol | 26.63 | 30.82 |
| CDX96488 | Canola | cytosol | 26.63 | 30.82 |
| CDX72996 | Canola | cytosol | 26.63 | 30.82 |
| CDY55679 | Canola | cytosol | 25.54 | 30.72 |
| CDX96150 | Canola | cytosol | 25.0 | 30.07 |
| CDX84967 | Canola | cytosol | 30.43 | 29.63 |
| CDX67796 | Canola | vacuole | 32.61 | 29.56 |
| CDY72611 | Canola | extracellular, vacuole | 32.07 | 29.5 |
| CDY36129 | Canola | cytosol | 29.89 | 29.41 |
| CDX98375 | Canola | endoplasmic reticulum | 32.61 | 29.41 |
| CDY40786 | Canola | cytosol | 29.35 | 29.35 |
| CDY03874 | Canola | cytosol | 29.35 | 29.35 |
| CDY27574 | Canola | cytosol | 30.43 | 29.32 |
| CDY06002 | Canola | extracellular, vacuole | 31.52 | 29.29 |
| CDY30399 | Canola | extracellular | 32.61 | 28.57 |
| CDX83488 | Canola | extracellular | 33.15 | 28.5 |
| CDY23356 | Canola | vacuole | 32.61 | 28.44 |
| CDX96729 | Canola | cytosol | 26.09 | 27.59 |
| CDX83860 | Canola | cytosol | 26.09 | 27.12 |
| CDY66855 | Canola | plastid | 27.72 | 26.98 |
| CDY37233 | Canola | plastid | 27.72 | 26.98 |
| CDY70127 | Canola | cytosol | 24.46 | 26.95 |
| CDY19196 | Canola | cytosol | 25.0 | 25.99 |
| CDY23852 | Canola | cytosol, mitochondrion, plastid | 25.54 | 22.07 |
| CDY44217 | Canola | endoplasmic reticulum, golgi | 33.7 | 21.99 |
| CDY06925 | Canola | cytosol, mitochondrion, plastid | 25.54 | 21.66 |
| CDX79938 | Canola | cytosol, mitochondrion, plastid | 25.0 | 21.6 |
| CDY14768 | Canola | cytosol, mitochondrion, plastid | 25.0 | 21.2 |
| CDY60169 | Canola | cytosol, plastid | 23.37 | 20.67 |
| CDY24421 | Canola | endoplasmic reticulum, golgi | 29.89 | 20.3 |
| CDY00910 | Canola | cytosol, plastid | 23.37 | 19.72 |
Protein Annotations
| Gene3D:1.10.238.10 | MapMan:35.1 | GO:A0A078H3L9 | UniProt:A0A078H3L9 | EnsemblPlants:CDY31433 | ProteinID:CDY31433 |
| ProteinID:CDY31433.1 | InterPro:EF-hand-dom_pair | InterPro:EF_Hand_1_Ca_BS | InterPro:EF_hand_dom | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005509 | EnsemblPlantsGene:GSBRNA2T00047666001 | InterPro:IPR002048 | PFAM:PF13405 | PFAM:PF13499 | ScanProsite:PS00018 |
| PFscan:PS50222 | PANTHER:PTHR45003 | PANTHER:PTHR45003:SF2 | SMART:SM00054 | SUPFAM:SSF47473 | UniParc:UPI0004EC474B |
| SEG:seg | : | : | : | : | : |
Description
BnaC03g63910DBnaC03g63910D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H3L9]
Coordinates
chrLK032272:+:144069..144623
Molecular Weight (calculated)
20428.0 Da
IEP (calculated)
4.538
GRAVY (calculated)
-0.427
Length
184 amino acids
Sequence
(BLAST)
(BLAST)
001: MASNGEKNKK VTSKSPSFSL RSPSLNALRL QRIFDLFDHN GDGFITLEEL SQALSRLGLN ANLSDLKSTV ESYIQPGNTG LNFEDFSSLH KTLDDCFFGG
101: DDDLSSPAAA DESDLAEAFK VFDENGDGFI CARELQAVLK KLGLPEGGEM ERVERMIISV DRNKDGRVDF FEFKNMMRTV KQIS
101: DDDLSSPAAA DESDLAEAFK VFDENGDGFI CARELQAVLK KLGLPEGGEM ERVERMIISV DRNKDGRVDF FEFKNMMRTV KQIS
001: MESNNNEKKK VARQSSSFRL RSPSLNALRL QRIFDLFDKN GDGFITVEEL SQALTRLGLN ADLSDLKSTV ESYIQPGNTG LNFDDFSSLH KTLDDSFFGG
101: ACGGGENEDD PSSAAENESD LAEAFKVFDE NGDGFISARE LQTVLKKLGL PEGGEMERVE KMIVSVDRNQ DGRVDFFEFK NMMRTVVIPS S
101: ACGGGENEDD PSSAAENESD LAEAFKVFDE NGDGFISARE LQTVLKKLGL PEGGEMERVE KMIVSVDRNQ DGRVDFFEFK NMMRTVVIPS S
Arabidopsis Description
CML42Calcium-binding protein CML42 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVG9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.