Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS6A01G065900.1 | |
| TraesCS6B01G088900.1 | |
| TraesCSU01G118100.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G20780.1 | TraesCS6A01G065900.1 | AT2G46600.1 | 19720824 |
| AT4G20780.1 | TraesCS6B01G088900.1 | AT2G46600.1 | 19720824 |
| AT4G20780.1 | TraesCSU01G118100.1 | AT2G46600.1 | 19720824 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G348900.1 | Wheat | cytosol | 96.95 | 97.55 |
| TraesCS5B01G342800.1 | Wheat | cytosol | 94.51 | 95.68 |
| HORVU5Hr1G085800.2 | Barley | cytosol | 91.46 | 85.71 |
| Os05t0312600-01 | Rice | cytosol, plastid | 72.56 | 60.41 |
| GSMUA_Achr8P01570_001 | Banana | cytosol | 52.44 | 46.49 |
| TraesCS4A01G132300.1 | Wheat | plastid | 52.44 | 45.03 |
| TraesCS2A01G103600.1 | Wheat | plastid | 51.83 | 44.5 |
| CDX94006 | Canola | cytosol | 48.17 | 42.47 |
| TraesCS7A01G306000.1 | Wheat | plastid | 50.61 | 42.35 |
| Bra020916.1-P | Field mustard | cytosol, plastid | 46.95 | 41.85 |
| CDX76451 | Canola | cytosol, plastid | 46.95 | 41.85 |
| CDY31433 | Canola | cytosol, plastid | 46.95 | 41.85 |
| Bra013470.1-P | Field mustard | cytosol | 46.95 | 40.96 |
| CDX79002 | Canola | cytosol | 46.95 | 40.96 |
| AT5G44460.1 | Thale cress | cytosol | 45.12 | 40.88 |
| AT4G20780.1 | Thale cress | cytosol | 46.95 | 40.31 |
| CDX82773 | Canola | cytosol | 46.95 | 40.31 |
| KRH40630 | Soybean | mitochondrion | 44.51 | 39.89 |
| Bra033745.1-P | Field mustard | cytosol | 43.9 | 39.56 |
| CDX94789 | Canola | cytosol | 43.9 | 39.56 |
| CDY49013 | Canola | cytosol | 43.29 | 39.01 |
| VIT_08s0056g00290.t01 | Wine grape | cytosol, mitochondrion | 45.12 | 38.54 |
| CDY14927 | Canola | cytosol | 42.68 | 38.46 |
| Bra039511.1-P | Field mustard | cytosol | 42.68 | 38.46 |
| Solyc10g074740.1.1 | Tomato | cytosol, plastid | 45.12 | 37.19 |
| CDX96968 | Canola | cytosol | 43.29 | 36.79 |
| PGSC0003DMT400071219 | Potato | cytosol, plastid | 44.51 | 36.68 |
| TraesCS7A01G050500.1 | Wheat | cytosol | 34.76 | 34.97 |
| TraesCS4A01G436700.1 | Wheat | cytosol | 35.37 | 33.33 |
| CDX98672 | Canola | cytosol | 48.78 | 31.5 |
| Bra038801.1-P | Field mustard | cytosol | 48.78 | 30.65 |
| TraesCS3A01G038300.1 | Wheat | cytosol | 31.71 | 27.96 |
| TraesCS3A01G488400.1 | Wheat | cytosol, plastid | 32.32 | 27.75 |
| TraesCS1A01G238800.1 | Wheat | mitochondrion | 31.71 | 27.51 |
| TraesCS2A01G349100.1 | Wheat | plastid | 35.98 | 27.44 |
| TraesCS1A01G134000.1 | Wheat | cytosol | 28.05 | 26.74 |
| TraesCS5A01G238900.1 | Wheat | mitochondrion | 25.61 | 22.95 |
| TraesCS3A01G488700.1 | Wheat | nucleus, plastid | 25.0 | 21.35 |
| TraesCS7A01G133200.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 37.8 | 18.34 |
Protein Annotations
| EnsemblPlants:TraesCS5A01G343000.1 | EnsemblPlantsGene:TraesCS5A01G343000 | Gene3D:1.10.238.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005509 |
| InterPro:EF-hand-dom_pair | InterPro:EF_Hand_1_Ca_BS | InterPro:EF_hand_dom | InterPro:IPR002048 | PANTHER:PTHR45003 | PANTHER:PTHR45003:SF1 |
| PFAM:PF13405 | PFAM:PF13499 | PFscan:PS50222 | ScanProsite:PS00018 | SEG:seg | SMART:SM00054 |
| SUPFAM:SSF47473 | TIGR:cd00051 | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chr5A:-:548220380..548221576
Molecular Weight (calculated)
17605.8 Da
IEP (calculated)
4.337
GRAVY (calculated)
-0.231
Length
164 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTAPPQANQ QQQQRHRRLR VRRVFDLFDH DGDGVITAAE LSGALGRLGL ALGAQADGLV AAYVAPGMPG MPGLRFADFE ALHAELAGGG EEDEEAEMRE
101: AFAVFDENGD GYISAAELQA VLERMGVPEA ACMARVQDMI AAHDRDSDGR VDFHEFKAMM AAGM
101: AFAVFDENGD GYISAAELQA VLERMGVPEA ACMARVQDMI AAHDRDSDGR VDFHEFKAMM AAGM
001: MESNNNEKKK VARQSSSFRL RSPSLNALRL QRIFDLFDKN GDGFITVEEL SQALTRLGLN ADLSDLKSTV ESYIQPGNTG LNFDDFSSLH KTLDDSFFGG
101: ACGGGENEDD PSSAAENESD LAEAFKVFDE NGDGFISARE LQTVLKKLGL PEGGEMERVE KMIVSVDRNQ DGRVDFFEFK NMMRTVVIPS S
101: ACGGGENEDD PSSAAENESD LAEAFKVFDE NGDGFISARE LQTVLKKLGL PEGGEMERVE KMIVSVDRNQ DGRVDFFEFK NMMRTVVIPS S
Arabidopsis Description
CML42Calcium-binding protein CML42 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVG9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.