Factsheet for Bra013470.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 3
plasma membrane 1
vacuole 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000430.1-P
Bra004524.1-P
Bra039271.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G20780.1	Bra000430.1-P	AT2G46600.1	19720824
AT4G20780.1	Bra004524.1-P	AT2G46600.1	19720824
AT4G20780.1	Bra039271.1-P	AT2G46600.1	19720824

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX79002	Canola	cytosol	100.0	100.0
AT4G20780.1	Thale cress	cytosol	86.17	84.82
Bra020916.1-P	Field mustard	cytosol, plastid	79.79	81.52
Bra033745.1-P	Field mustard	cytosol	69.68	71.98
Bra039511.1-P	Field mustard	cytosol	65.43	67.58
VIT_08s0056g00290.t01	Wine grape	cytosol, mitochondrion	61.17	59.9
Bra038801.1-P	Field mustard	cytosol	82.45	59.39
Solyc10g074740.1.1	Tomato	cytosol, plastid	61.17	57.79
PGSC0003DMT400071219	Potato	cytosol, plastid	60.64	57.29
KRH40630	Soybean	mitochondrion	55.32	56.83
Zm00001d029028_P001	Maize	plastid	54.26	54.26
GSMUA_Achr8P01570_001	Banana	cytosol	53.19	54.05
EER92319	Sorghum	cytosol	53.19	53.19
Zm00001d047535_P001	Maize	plastid	52.66	52.94
KXG39446	Sorghum	plastid	53.72	52.88
Os03t0331700-02	Rice	plasma membrane	52.13	51.58
TraesCS7D01G302700.1	Wheat	plastid	53.72	51.53
TraesCS4D01G174400.1	Wheat	plastid	51.6	51.32
EER97743	Sorghum	plastid	54.26	51.26
TraesCS7A01G306000.1	Wheat	plastid	53.19	51.02
HORVU7Hr1G072770.1	Barley	plastid	53.72	51.01
TraesCS7B01G206200.1	Wheat	plastid	53.72	51.01
Os08t0144100-01	Rice	plasma membrane	52.66	50.51
TraesCS4B01G172400.1	Wheat	plastid	50.53	50.26
TraesCS4A01G132300.1	Wheat	plastid	51.06	50.26
Zm00001d022430_P001	Maize	cytosol, plastid	53.19	50.0
HORVU4Hr1G050990.1	Barley	plastid	51.06	49.74
Zm00001d007181_P001	Maize	plastid	53.19	49.26
Os07t0681400-01	Rice	cytosol	51.06	48.73
TraesCS2B01G120900.1	Wheat	plastid	49.47	48.69
TraesCS2A01G103600.1	Wheat	plastid	49.47	48.69
TraesCS2D01G103400.1	Wheat	plastid	48.94	48.17
TraesCS5D01G348900.1	Wheat	cytosol	40.96	47.24
TraesCS5A01G343000.1	Wheat	cytosol, mitochondrion	40.96	46.95
TraesCS5B01G342800.1	Wheat	cytosol	40.43	46.91
HORVU5Hr1G085800.2	Barley	cytosol	40.96	44.0
Bra040379.1-P	Field mustard	cytosol	31.91	40.27
Bra000836.1-P	Field mustard	cytosol	32.98	40.26
Os05t0312600-01	Rice	cytosol, plastid	41.49	39.59
Bra001254.1-P	Field mustard	cytosol	31.38	38.56
Bra034907.1-P	Field mustard	cytosol	29.79	36.84
Bra032677.1-P	Field mustard	cytosol	29.79	36.84
Bra034870.1-P	Field mustard	cytosol	32.45	36.09
Bra019554.1-P	Field mustard	cytosol	32.45	36.09
Bra037722.1-P	Field mustard	cytosol	32.45	36.09
Bra035972.1-P	Field mustard	cytosol	20.74	35.14
Bra025439.1-P	Field mustard	cytosol	28.19	33.12
Bra032785.1-P	Field mustard	cytosol	22.34	32.81
Bra004165.1-P	Field mustard	cytosol	25.53	31.37
Bra003376.1-P	Field mustard	vacuole	33.51	31.03
Bra007450.1-P	Field mustard	endoplasmic reticulum, vacuole	31.91	30.3
Bra010974.1-P	Field mustard	cytosol	29.79	29.95
Bra012497.1-P	Field mustard	cytosol	28.72	29.35
Bra039845.1-P	Field mustard	plastid	28.72	28.57
Bra016936.1-P	Field mustard	cytosol	15.96	28.57
Bra015979.1-P	Field mustard	cytosol	23.94	28.3
Bra016564.1-P	Field mustard	cytosol	25.53	27.59
Bra025924.1-P	Field mustard	cytosol	24.47	27.54
Bra029821.1-P	Field mustard	plastid	23.4	21.15
Bra004620.1-P	Field mustard	cytosol, mitochondrion, plastid	22.87	20.19

Protein Annotations

EnsemblPlants:Bra013470.1	EnsemblPlants:Bra013470.1-P	EnsemblPlantsGene:Bra013470	Gene3D:1.10.238.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005509	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	InterPro:IPR002048	PANTHER:PTHR45003
PANTHER:PTHR45003:SF2	PFAM:PF13405	PFAM:PF13499	PFscan:PS50222	ScanProsite:PS00018	SEG:seg
SMART:SM00054	SUPFAM:SSF47473	UniParc:UPI0002546BCB	UniProt:M4DAG0	MapMan:35.1	:

Description

AT4G20780 (E=5e-066) | calcium-binding protein, putative

Coordinates

chrA01:-:5842546..5843112

Molecular Weight (calculated)

20698.9 Da

IEP (calculated)

4.246

GRAVY (calculated)

-0.458

Length

188 amino acids

Sequence
(BLAST)

001: MESNGDNKRV NIQSSPSFRL RSPSLNALRL QRIFDLFDKN GDGFITADEL SQALSHLGLN ADLSDLLSTV ESYIQPGNAG LNFHDFSSLH KTLDDSFFGG
101: AGDNDDDDPS STSADESDLA EAFKVFDENG DGFISARELQ TVLKKLGLPE GGEMERVEKM IVSVDRNKDG RVDFFEFKNM MHAVVIPS

Best Arabidopsis Sequence Match ( AT4G20780.1 )
(BLAST)

001: MESNNNEKKK VARQSSSFRL RSPSLNALRL QRIFDLFDKN GDGFITVEEL SQALTRLGLN ADLSDLKSTV ESYIQPGNTG LNFDDFSSLH KTLDDSFFGG
101: ACGGGENEDD PSSAAENESD LAEAFKVFDE NGDGFISARE LQTVLKKLGL PEGGEMERVE KMIVSVDRNQ DGRVDFFEFK NMMRTVVIPS S

Arabidopsis Description

CML42Calcium-binding protein CML42 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVG9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.