Factsheet for Bra000836.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
extracellular 1
cytosol 3
vacuole 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90890	Canola	cytosol	99.35	99.35
AT4G03290.1	Thale cress	cytosol	88.96	88.96
KRH29625	Soybean	cytosol	48.05	69.81
Bra040379.1-P	Field mustard	cytosol	66.88	69.13
Bra001254.1-P	Field mustard	cytosol	66.88	67.32
Solyc05g050750.1.1	Tomato	cytosol, unclear	64.94	66.67
PGSC0003DMT400018016	Potato	cytosol	64.94	66.67
Bra035972.1-P	Field mustard	cytosol	48.05	66.67
Bra037722.1-P	Field mustard	cytosol	70.13	63.91
Bra019554.1-P	Field mustard	cytosol	70.13	63.91
Bra034870.1-P	Field mustard	cytosol	70.13	63.91
Bra032677.1-P	Field mustard	cytosol	62.34	63.16
Solyc11g044920.1.1	Tomato	cytosol	48.7	61.98
Bra034907.1-P	Field mustard	cytosol	61.04	61.84
Bra007450.1-P	Field mustard	endoplasmic reticulum, vacuole	64.29	50.0
Bra003376.1-P	Field mustard	vacuole	64.94	49.26
VIT_05s0102g00450.t01	Wine grape	endoplasmic reticulum, golgi	68.18	49.07
KRH24625	Soybean	cytosol	68.18	47.51
PGSC0003DMT400069195	Potato	golgi, plastid	67.53	47.49
Bra032785.1-P	Field mustard	cytosol	33.12	39.84
Bra004165.1-P	Field mustard	cytosol	35.71	35.95
Bra012497.1-P	Field mustard	cytosol	41.56	34.78
Bra010974.1-P	Field mustard	cytosol	42.21	34.76
Bra025439.1-P	Field mustard	cytosol	35.71	34.38
Bra016936.1-P	Field mustard	cytosol	23.38	34.29
Bra020916.1-P	Field mustard	cytosol, plastid	40.91	34.24
Bra039511.1-P	Field mustard	cytosol	39.61	33.52
Bra015979.1-P	Field mustard	cytosol	34.42	33.33
Bra013470.1-P	Field mustard	cytosol	40.26	32.98
Bra033745.1-P	Field mustard	cytosol	38.31	32.42
Bra025924.1-P	Field mustard	cytosol	33.12	30.54
Bra016564.1-P	Field mustard	cytosol	34.42	30.46
Bra039845.1-P	Field mustard	plastid	35.06	28.57
Bra038801.1-P	Field mustard	cytosol	42.86	25.29
Bra029821.1-P	Field mustard	plastid	33.77	25.0
Bra004620.1-P	Field mustard	cytosol, mitochondrion, plastid	30.52	22.07

Protein Annotations

Gene3D:1.10.238.10	MapMan:35.1	EnsemblPlantsGene:Bra000836	EnsemblPlants:Bra000836.1	EnsemblPlants:Bra000836.1-P	InterPro:EF-hand-dom_pair
InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005509	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006950	GO:GO:0008150
GO:GO:0009409	GO:GO:0009628	InterPro:IPR002048	UniProt:M4C9F7	PFAM:PF13499	ScanProsite:PS00018
PFscan:PS50222	PANTHER:PTHR10891	PANTHER:PTHR10891:SF546	SMART:SM00054	SUPFAM:SSF47473	UniParc:UPI000254052E

Description

AT4G03290 (E=6e-076) | calcium-binding protein, putative

Coordinates

chrA03:-:13418981..13419445

Molecular Weight (calculated)

17519.9 Da

IEP (calculated)

4.239

GRAVY (calculated)

-0.501

Length

154 amino acids

Sequence
(BLAST)

001: MNTTELKRVF QIFDKDGDGR ITKKELNDSL KNLGIIIPEK ELGQMIDKID VNGDGCVDIE EFGELYKTIM VEDEDEIGEE DMKEAFNVFD KNGDGFITVD
101: ELKAVLSSLG LKQGKTLEEC RKMIIQVDVD GDGRVDYTEF RQMMKKGRFF SSLS

Best Arabidopsis Sequence Match ( AT4G03290.1 )
(BLAST)

001: MDSTELNRVF QMFDKDGDGK ITTKELNESF KNLGIIIPED ELTQIIQKID VNGDGCVDIE EFGELYKTIM VEDEDEVGEE DMKEAFNVFD RNGDGFITVD
101: ELKAVLSSLG LKQGKTLEEC RKMIMQVDVD GDGRVNYMEF RQMMKKGRFF SSLS

Arabidopsis Description

CML6Calmodulin-like protein 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZR02]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.