Factsheet for Bra012497.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
plasma membrane 1
vacuole 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY40786	Canola	cytosol	99.46	99.46
CDY03874	Canola	cytosol	99.46	99.46
Bra032785.1-P	Field mustard	cytosol	60.87	87.5
Bra010974.1-P	Field mustard	cytosol	86.96	85.56
KRH75577	Soybean	cytosol	49.46	59.87
Solyc01g005370.2.1	Tomato	cytosol	54.35	58.14
KRH37459	Soybean	cytosol	32.07	57.84
PGSC0003DMT400025178	Potato	cytosol	54.35	57.47
KRH60410	Soybean	cytosol, plastid	58.15	56.91
Solyc04g008000.2.1	Tomato	cytosol, plastid	56.52	54.45
KRH49632	Soybean	cytosol, mitochondrion, plastid	53.8	54.4
PGSC0003DMT400075801	Potato	plastid	56.52	53.61
Bra004165.1-P	Field mustard	cytosol	35.87	43.14
Bra025439.1-P	Field mustard	cytosol	36.96	42.5
Bra040379.1-P	Field mustard	cytosol	34.24	42.28
Bra000836.1-P	Field mustard	cytosol	34.78	41.56
Bra034907.1-P	Field mustard	cytosol	34.24	41.45
Os01t0949500-01	Rice	plasma membrane	41.3	41.08
TraesCS3D01G484900.1	Wheat	cytosol, mitochondrion	40.76	40.32
EES04217	Sorghum	cytosol, mitochondrion, plastid	41.3	40.21
Bra032677.1-P	Field mustard	cytosol	33.15	40.13
Bra016564.1-P	Field mustard	cytosol	37.5	39.66
Bra015979.1-P	Field mustard	cytosol	34.24	39.62
Bra025924.1-P	Field mustard	cytosol	35.87	39.52
TraesCS3B01G536200.1	Wheat	cytosol, plastid	40.76	39.47
TraesCS3B01G538300.1	Wheat	cytosol, plastid	40.76	39.47
TraesCS3D01G483200.1	Wheat	cytosol, plastid	40.76	39.27
TraesCS3A01G488400.1	Wheat	cytosol, plastid	40.22	38.74
HORVU3Hr1G107090.2	Barley	cytosol, plastid	40.22	38.74
Zm00001d042107_P001	Maize	mitochondrion	40.76	38.66
Zm00001d009985_P001	Maize	cytosol, mitochondrion, plastid	39.67	38.62
Bra001254.1-P	Field mustard	cytosol	32.07	38.56
Bra035972.1-P	Field mustard	cytosol	22.83	37.84
HORVU1Hr1G057410.1	Barley	mitochondrion	38.59	37.57
TraesCS1D01G239000.1	Wheat	mitochondrion	38.59	37.57
TraesCS1B01G250900.1	Wheat	mitochondrion	38.59	37.57
TraesCS1A01G238800.1	Wheat	mitochondrion	38.59	37.57
Bra034870.1-P	Field mustard	cytosol	33.7	36.69
Bra037722.1-P	Field mustard	cytosol	33.7	36.69
Bra019554.1-P	Field mustard	cytosol	33.7	36.69
Bra016936.1-P	Field mustard	cytosol	20.65	36.19
EES19444	Sorghum	plastid	38.59	35.68
Os05t0380900-01	Rice	cytosol, mitochondrion	38.59	35.32
Zm00001d038061_P001	Maize	mitochondrion	39.13	35.29
Bra033745.1-P	Field mustard	cytosol	29.89	30.22
Bra039511.1-P	Field mustard	cytosol	29.35	29.67
Bra020916.1-P	Field mustard	cytosol, plastid	29.35	29.35
Bra039845.1-P	Field mustard	plastid	29.89	29.1
Bra013470.1-P	Field mustard	cytosol	29.35	28.72
Bra007450.1-P	Field mustard	endoplasmic reticulum, vacuole	30.43	28.28
Bra003376.1-P	Field mustard	vacuole	30.98	28.08
Bra029821.1-P	Field mustard	plastid	30.43	26.92
Bra004620.1-P	Field mustard	cytosol, mitochondrion, plastid	29.35	25.35
Bra038801.1-P	Field mustard	cytosol	28.8	20.31

Protein Annotations

EnsemblPlants:Bra012497.1	EnsemblPlants:Bra012497.1-P	EnsemblPlantsGene:Bra012497	Gene3D:1.10.238.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005509	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	InterPro:IPR002048	PANTHER:PTHR10891
PANTHER:PTHR10891:SF738	PFAM:PF13499	PFscan:PS50222	ScanProsite:PS00018	SMART:SM00054	SUPFAM:SSF47473
UniParc:UPI000254123A	UniProt:M4D7N7	MapMan:35.1	:	:	:

Description

AT1G24620 (E=5e-087) | polcalcin, putative / calcium-binding pollen allergen, putative

Coordinates

chrA07:-:7191821..7192375

Molecular Weight (calculated)

20191.7 Da

IEP (calculated)

4.344

GRAVY (calculated)

-0.553

Length

184 amino acids

Sequence
(BLAST)

001: MFNSKKESNG TASRTGADSP FLQKARSGKT EVRELEAVFK KFDVNGDGKI SSKELGSIMA SLGHEVPEEE LQKAVAEIDK KGDGYINLEE FVELFTKGMD
101: QNDVLENLKD AFSVYDIDGN GSISAEELHE VLRSLGDECS IAECRKMISG VDKDGDGTID FEEFKVMMTM GSRRDNVMGG GAQW

Best Arabidopsis Sequence Match ( AT1G24620.1 )
(BLAST)

001: MFNKNQGSNG GSSSNVGIGA DSPYLQKARS GKTEIRELEA VFKKFDVNGD GKISSKELGA IMTSLGHEVP EEELEKAITE IDRKGDGYIN FEEFVELNTK
101: GMDQNDVLEN LKDAFSVYDI DGNGSISAEE LHEVLRSLGD ECSIAECRKM IGGVDKDGDG TIDFEEFKIM MTMGSRRDNV MGGGPR

Arabidopsis Description

CML25Probable calcium-binding protein CML25 [Source:UniProtKB/Swiss-Prot;Acc:Q9FYK2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.