Factsheet for TraesCS1D01G239000.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 6
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G238800.1	Wheat	mitochondrion	98.41	98.41
TraesCS1B01G250900.1	Wheat	mitochondrion	96.3	96.3
HORVU1Hr1G057410.1	Barley	mitochondrion	91.01	91.01
Zm00001d009985_P001	Maize	cytosol, mitochondrion, plastid	73.55	73.55
Zm00001d038061_P001	Maize	mitochondrion	77.25	71.57
EES19444	Sorghum	plastid	74.07	70.35
Os05t0380900-01	Rice	cytosol, mitochondrion	71.96	67.66
TraesCS3D01G484900.1	Wheat	cytosol, mitochondrion	66.14	67.2
TraesCS3D01G483200.1	Wheat	cytosol, plastid	67.72	67.02
KRH75577	Soybean	cytosol	35.45	44.08
TraesCS1D01G125800.1	Wheat	cytosol	39.15	43.02
PGSC0003DMT400025178	Potato	cytosol	38.62	41.95
Solyc01g005370.2.1	Tomato	cytosol	38.1	41.86
PGSC0003DMT400075801	Potato	plastid	42.86	41.75
KRH60410	Soybean	cytosol, plastid	41.27	41.49
Solyc04g008000.2.1	Tomato	cytosol, plastid	41.27	40.84
KRH49632	Soybean	cytosol, mitochondrion, plastid	39.15	40.66
AT1G24620.1	Thale cress	cytosol	38.62	39.25
CDY40786	Canola	cytosol	38.1	39.13
CDY03874	Canola	cytosol	38.1	39.13
Bra032785.1-P	Field mustard	cytosol	26.45	39.06
Bra012497.1-P	Field mustard	cytosol	37.57	38.59
Bra010974.1-P	Field mustard	cytosol	37.04	37.43
CDY36129	Canola	cytosol	37.04	37.43
CDX84967	Canola	cytosol	37.04	37.04
TraesCS7D01G045800.1	Wheat	cytosol	33.86	36.99
TraesCS3D01G041500.1	Wheat	cytosol	35.98	36.76
CDY27574	Canola	cytosol	37.04	36.65
KRH37459	Soybean	cytosol	19.58	36.27
TraesCS5D01G348900.1	Wheat	cytosol	27.51	31.9
TraesCS2D01G347500.1	Wheat	plastid	37.04	31.82
TraesCS5D01G246000.1	Wheat	mitochondrion	30.16	31.15
TraesCS5D01G141900.1	Wheat	plastid	29.1	30.05
TraesCS4D01G174400.1	Wheat	plastid	29.1	29.1
TraesCS2D01G103400.1	Wheat	plastid	29.1	28.8
TraesCS7D01G302700.1	Wheat	plastid	29.63	28.57
TraesCS7D01G132700.1	Wheat	endoplasmic reticulum	33.86	27.71
TraesCS3D01G041400.1	Wheat	cytosol, plastid	34.39	27.31
CDY24421	Canola	endoplasmic reticulum, golgi	36.51	25.46
TraesCS3D01G484600.1	Wheat	cytosol, plastid	25.4	24.62

Protein Annotations

EnsemblPlants:TraesCS1D01G239000.1	EnsemblPlantsGene:TraesCS1D01G239000	Gene3D:1.10.238.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005509
InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	InterPro:IPR002048	PANTHER:PTHR10891	PANTHER:PTHR10891:SF635
PFAM:PF13499	PFscan:PS50222	ScanProsite:PS00018	SEG:seg	SMART:SM00054	SUPFAM:SSF47473
TIGR:cd00051	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chr1D:-:328797433..328798303

Molecular Weight (calculated)

20251.8 Da

IEP (calculated)

4.961

GRAVY (calculated)

-0.356

Length

189 amino acids

Sequence
(BLAST)

001: MGKMRALFSR SRSGGRASRS SSTKSSSMPP SPARSPSVRE DEMERVFRKF DANGDGRISR AELAALFESV GHAVTDDEVT RMMEEADADG DGYISLAEFA
101: AINAAPDAAV EEDLRHAFRV FDADGNGVIS PAELARVLRG LGEAATVAQC RRMIEGVDRN GDGLVSFDEF KLMMANGKGF GLAQANVRA

Best Arabidopsis Sequence Match ( AT1G24620.1 )
(BLAST)

001: MFNKNQGSNG GSSSNVGIGA DSPYLQKARS GKTEIRELEA VFKKFDVNGD GKISSKELGA IMTSLGHEVP EEELEKAITE IDRKGDGYIN FEEFVELNTK
101: GMDQNDVLEN LKDAFSVYDI DGNGSISAEE LHEVLRSLGD ECSIAECRKM IGGVDKDGDG TIDFEEFKIM MTMGSRRDNV MGGGPR

Arabidopsis Description

CML25Probable calcium-binding protein CML25 [Source:UniProtKB/Swiss-Prot;Acc:Q9FYK2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.