Factsheet for PGSC0003DMT400075801

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 3
cytosol 2
plasma membrane 1
vacuole 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g008000.2.1	Tomato	cytosol, plastid	91.75	93.19
PGSC0003DMT400025178	Potato	cytosol	61.34	68.39
KRH60410	Soybean	cytosol, plastid	63.92	65.96
Bra032785.1-P	Field mustard	cytosol	40.72	61.72
KRH75577	Soybean	cytosol	47.94	61.18
KRH49632	Soybean	cytosol, mitochondrion, plastid	56.7	60.44
KRH37459	Soybean	cytosol	30.93	58.82
Bra012497.1-P	Field mustard	cytosol	53.61	56.52
CDY03874	Canola	cytosol	53.09	55.98
CDY40786	Canola	cytosol	53.09	55.98
AT1G24620.1	Thale cress	cytosol	52.58	54.84
CDX84967	Canola	cytosol	53.09	54.5
Bra010974.1-P	Field mustard	cytosol	52.06	54.01
CDY36129	Canola	cytosol	52.06	54.01
CDY27574	Canola	cytosol	53.09	53.93
PGSC0003DMT400026987	Potato	cytosol	38.14	51.03
PGSC0003DMT400078654	Potato	cytosol	40.72	50.64
Os01t0949500-01	Rice	plasma membrane	45.36	47.57
TraesCS3D01G483200.1	Wheat	cytosol, plastid	44.33	45.03
TraesCS3A01G488400.1	Wheat	cytosol, plastid	44.33	45.03
TraesCS3B01G538300.1	Wheat	cytosol, plastid	43.81	44.74
TraesCS3B01G536200.1	Wheat	cytosol, plastid	43.81	44.74
EES04217	Sorghum	cytosol, mitochondrion, plastid	43.3	44.44
PGSC0003DMT400071189	Potato	cytosol	34.02	44.3
TraesCS3D01G484900.1	Wheat	cytosol, mitochondrion	42.27	44.09
HORVU3Hr1G107090.2	Barley	cytosol, plastid	43.3	43.98
HORVU1Hr1G057410.1	Barley	mitochondrion	42.27	43.39
TraesCS1B01G250900.1	Wheat	mitochondrion	42.27	43.39
TraesCS1A01G238800.1	Wheat	mitochondrion	42.27	43.39
PGSC0003DMT400018016	Potato	cytosol	33.51	43.33
TraesCS1D01G239000.1	Wheat	mitochondrion	41.75	42.86
Zm00001d042107_P001	Maize	mitochondrion	42.78	42.78
Zm00001d009985_P001	Maize	cytosol, mitochondrion, plastid	41.24	42.33
PGSC0003DMT400074098	Potato	cytosol	31.96	40.26
Os05t0380900-01	Rice	cytosol, mitochondrion	41.24	39.8
EES19444	Sorghum	plastid	40.72	39.7
PGSC0003DMT400014742	Potato	cytosol	33.51	39.63
Zm00001d038061_P001	Maize	mitochondrion	40.72	38.73
PGSC0003DMT400033250	Potato	cytosol	37.63	38.02
PGSC0003DMT400086334	Potato	cytosol	34.02	37.29
CDY24421	Canola	endoplasmic reticulum, golgi	51.55	36.9
PGSC0003DMT400089961	Potato	cytosol	30.41	34.1
PGSC0003DMT400021079	Potato	cytosol, mitochondrion, plastid	35.05	33.17
PGSC0003DMT400076709	Potato	mitochondrion	35.05	32.23
PGSC0003DMT400079359	Potato	extracellular, golgi	37.63	31.2
PGSC0003DMT400066610	Potato	plastid	28.87	30.27
PGSC0003DMT400069195	Potato	golgi, plastid	34.02	30.14
PGSC0003DMT400027581	Potato	cytosol, plastid	32.99	29.63
PGSC0003DMT400071219	Potato	cytosol, plastid	28.35	27.64

Protein Annotations

Gene3D:1.10.238.10	EntrezGene:102592936	MapMan:35.1	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom
GO:GO:0003674	GO:GO:0005488	GO:GO:0005509	InterPro:IPR002048	UniProt:M1CVQ7	PFAM:PF13499
EnsemblPlantsGene:PGSC0003DMG402029470	PGSC:PGSC0003DMG402029470	EnsemblPlants:PGSC0003DMT400075801	ScanProsite:PS00018	PFscan:PS50222	PANTHER:PTHR10891
PANTHER:PTHR10891:SF738	SMART:SM00054	SUPFAM:SSF47473	UniParc:UPI000294FC79	RefSeq:XP_006355093.1	SEG:seg

Description

Calcium-binding pollen allergen [Source:PGSC_GENE;Acc:PGSC0003DMG402029470]

Coordinates

chr4:-:2641319..2642459

Molecular Weight (calculated)

21453.6 Da

IEP (calculated)

4.181

GRAVY (calculated)

-0.234

Length

194 amino acids

Sequence
(BLAST)

001: MGLKSLFKIK KKGVPSANPF VVNNNPMPVN LSRVSSIDSR ARIEEELEQV FKKFDMNGDG KICSSELGSI MASLGNPTTE EELVNMIREV DSDGDGFIDL
101: QEFIELNTKD IDSNEVLESL KDAFSVFDMD KNGSISAEEL LTVLRSLGED CTLAECRKMI SGVDCDGDGM INFEEFKIMM AKGSRFDVTD ARIV

Best Arabidopsis Sequence Match ( AT1G24620.1 )
(BLAST)

001: MFNKNQGSNG GSSSNVGIGA DSPYLQKARS GKTEIRELEA VFKKFDVNGD GKISSKELGA IMTSLGHEVP EEELEKAITE IDRKGDGYIN FEEFVELNTK
101: GMDQNDVLEN LKDAFSVYDI DGNGSISAEE LHEVLRSLGD ECSIAECRKM IGGVDKDGDG TIDFEEFKIM MTMGSRRDNV MGGGPR

Arabidopsis Description

CML25Probable calcium-binding protein CML25 [Source:UniProtKB/Swiss-Prot;Acc:Q9FYK2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.