Factsheet for PGSC0003DMT400071219

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 3
plastid 2
cytosol 2
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400048609

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G20780.1	PGSC0003DMT400048609	AT2G46600.1	19720824

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g074740.1.1	Tomato	cytosol, plastid	96.98	96.98
AT5G44460.1	Thale cress	cytosol	59.3	65.19
CDX94789	Canola	cytosol	58.29	63.74
Bra033745.1-P	Field mustard	cytosol	57.79	63.19
Bra039511.1-P	Field mustard	cytosol	57.79	63.19
CDY49013	Canola	cytosol	57.79	63.19
CDY14927	Canola	cytosol	57.79	63.19
AT4G20780.1	Thale cress	cytosol	60.3	62.83
VIT_08s0056g00290.t01	Wine grape	cytosol, mitochondrion	60.3	62.5
CDY31433	Canola	cytosol, plastid	57.79	62.5
KRH40630	Soybean	mitochondrion	57.29	62.3
Bra020916.1-P	Field mustard	cytosol, plastid	57.29	61.96
CDX76451	Canola	cytosol, plastid	57.29	61.96
CDX94006	Canola	cytosol	57.29	61.29
CDX82773	Canola	cytosol	58.79	61.26
CDX79002	Canola	cytosol	57.29	60.64
Bra013470.1-P	Field mustard	cytosol	57.29	60.64
CDX96968	Canola	cytosol	57.29	59.07
GSMUA_Achr8P01570_001	Banana	cytosol	50.75	54.59
Os03t0331700-02	Rice	plasma membrane	50.75	53.16
Zm00001d029028_P001	Maize	plastid	49.25	52.13
KXG39446	Sorghum	plastid	49.75	51.83
TraesCS4D01G174400.1	Wheat	plastid	48.74	51.32
EER92319	Sorghum	cytosol	48.24	51.06
TraesCS4B01G172400.1	Wheat	plastid	48.24	50.79
TraesCS4A01G132300.1	Wheat	plastid	48.74	50.79
TraesCS2B01G120900.1	Wheat	plastid	48.74	50.79
TraesCS2A01G103600.1	Wheat	plastid	48.74	50.79
Zm00001d047535_P001	Maize	plastid	47.24	50.27
EER97743	Sorghum	plastid	50.25	50.25
HORVU4Hr1G050990.1	Barley	plastid	48.24	49.74
TraesCS2D01G103400.1	Wheat	plastid	47.74	49.74
Zm00001d022430_P001	Maize	cytosol, plastid	49.75	49.5
TraesCS7A01G306000.1	Wheat	plastid	48.74	49.49
TraesCS7D01G302700.1	Wheat	plastid	48.24	48.98
Zm00001d007181_P001	Maize	plastid	49.75	48.77
Os07t0681400-01	Rice	cytosol	48.24	48.73
Os08t0144100-01	Rice	plasma membrane	47.74	48.47
HORVU7Hr1G072770.1	Barley	plastid	47.74	47.98
TraesCS7B01G206200.1	Wheat	plastid	47.24	47.47
CDX98672	Canola	cytosol	57.29	44.88
TraesCS5D01G348900.1	Wheat	cytosol	36.68	44.79
TraesCS5A01G343000.1	Wheat	cytosol, mitochondrion	36.68	44.51
Bra038801.1-P	Field mustard	cytosol	57.79	44.06
TraesCS5B01G342800.1	Wheat	cytosol	35.68	43.83
HORVU5Hr1G085800.2	Barley	cytosol	36.68	41.71
Os05t0312600-01	Rice	cytosol, plastid	38.69	39.09
PGSC0003DMT400018016	Potato	cytosol	28.64	38.0
PGSC0003DMT400071189	Potato	cytosol	28.14	37.58
PGSC0003DMT400026987	Potato	cytosol	25.13	34.48
PGSC0003DMT400074098	Potato	cytosol	26.13	33.77
PGSC0003DMT400086334	Potato	cytosol	28.64	32.2
PGSC0003DMT400078654	Potato	cytosol	24.12	30.77
PGSC0003DMT400025178	Potato	cytosol	26.63	30.46
PGSC0003DMT400014742	Potato	cytosol	24.62	29.88
PGSC0003DMT400069195	Potato	golgi, plastid	32.16	29.22
PGSC0003DMT400075801	Potato	plastid	27.64	28.35
PGSC0003DMT400089961	Potato	cytosol	24.62	28.32
PGSC0003DMT400079359	Potato	extracellular, golgi	30.65	26.07
PGSC0003DMT400033250	Potato	cytosol	25.13	26.04
PGSC0003DMT400066610	Potato	plastid	23.12	24.86
PGSC0003DMT400027581	Potato	cytosol, plastid	23.62	21.76
PGSC0003DMT400076709	Potato	mitochondrion	22.11	20.85
PGSC0003DMT400021079	Potato	cytosol, mitochondrion, plastid	20.1	19.51

Protein Annotations

Gene3D:1.10.238.10	EntrezGene:102577856	MapMan:35.1	ProteinID:AAA33811	ProteinID:AAA33811.1	InterPro:EF-hand-dom_pair
InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005509	GO:GO:0046872
InterPro:IPR002048	EMBL:L02830	UniProt:M1CND1	PFAM:PF13202	PFAM:PF13499	EnsemblPlantsGene:PGSC0003DMG400027692
PGSC:PGSC0003DMG400027692	EnsemblPlants:PGSC0003DMT400071219	ScanProsite:PS00018	PFscan:PS50222	PANTHER:PTHR45003	PANTHER:PTHR45003:SF2
SMART:SM00054	SUPFAM:SSF47473	UniParc:UPI0002968452	RefSeq:XP_006362329.1	SEG:seg	:

Description

Calcium-binding protein CAST [Source:PGSC_GENE;Acc:PGSC0003DMG400027692]

Coordinates

chr10:+:48443026..48444121

Molecular Weight (calculated)

22520.5 Da

IEP (calculated)

4.288

GRAVY (calculated)

-0.423

Length

199 amino acids

Sequence
(BLAST)

001: MGSVQDENKD EFKQSLTRGK LKPSSSSSFR LRSPSLNSIR LRRIFDVFDR NHDCLISVEE LSQALNLLGL DADLSEIESM VKLHIKPENT GLRFEDFEAL
101: HLSLNDVFFG SKCEDKLGLN PDPAQDESDL KEAFDVFDEN GDGFISAKEL QVVLEKLGLP EGSEIDRVEM MISSVDQDHD GRVDFFEFKD MMRTVIVPS

Best Arabidopsis Sequence Match ( AT4G20780.1 )
(BLAST)

001: MESNNNEKKK VARQSSSFRL RSPSLNALRL QRIFDLFDKN GDGFITVEEL SQALTRLGLN ADLSDLKSTV ESYIQPGNTG LNFDDFSSLH KTLDDSFFGG
101: ACGGGENEDD PSSAAENESD LAEAFKVFDE NGDGFISARE LQTVLKKLGL PEGGEMERVE KMIVSVDRNQ DGRVDFFEFK NMMRTVVIPS S

Arabidopsis Description

CML42Calcium-binding protein CML42 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVG9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.