CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
extracellular 1
cytosol 2
vacuole 1
plasma membrane 1
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG39446	Sorghum	plastid	90.96	89.53
Zm00001d029028_P001	Maize	plastid	89.36	89.36
Os03t0331700-02	Rice	plasma membrane	84.57	83.68
Zm00001d047535_P001	Maize	plastid	80.85	81.28
TraesCS4A01G132300.1	Wheat	plastid	80.85	79.58
TraesCS4D01G174400.1	Wheat	plastid	79.79	79.37
TraesCS4B01G172400.1	Wheat	plastid	79.79	79.37
HORVU4Hr1G050990.1	Barley	plastid	81.38	79.27
EER97743	Sorghum	plastid	70.74	66.83
GSMUA_Achr8P01570_001	Banana	cytosol	64.89	65.95
AT5G44460.1	Thale cress	cytosol	52.13	54.14
Bra033745.1-P	Field mustard	cytosol	51.6	53.3
CDX94006	Canola	cytosol	52.66	53.23
CDX79002	Canola	cytosol	53.19	53.19
Bra013470.1-P	Field mustard	cytosol	53.19	53.19
CDX94789	Canola	cytosol	51.06	52.75
CDY49013	Canola	cytosol	51.06	52.75
CDY31433	Canola	cytosol, plastid	51.6	52.72
Bra020916.1-P	Field mustard	cytosol, plastid	51.06	52.17
CDX76451	Canola	cytosol, plastid	51.06	52.17
AT4G20780.1	Thale cress	cytosol	52.13	51.31
CDX82773	Canola	cytosol	52.13	51.31
CDY14927	Canola	cytosol	49.47	51.1
Bra039511.1-P	Field mustard	cytosol	49.47	51.1
VIT_08s0056g00290.t01	Wine grape	cytosol, mitochondrion	50.53	49.48
Solyc10g074740.1.1	Tomato	cytosol, plastid	52.13	49.25
PGSC0003DMT400071219	Potato	cytosol, plastid	51.06	48.24
KRH40630	Soybean	mitochondrion	46.81	48.09
CDX96968	Canola	cytosol	48.94	47.67
OQU78964	Sorghum	cytosol	35.64	40.61
CDX98672	Canola	cytosol	52.66	38.98
Bra038801.1-P	Field mustard	cytosol	52.66	37.93
EES04217	Sorghum	cytosol, mitochondrion, plastid	31.91	31.75
EES19251	Sorghum	cytosol	28.72	30.17
EES11048	Sorghum	plastid	36.7	28.99
EES19444	Sorghum	plastid	28.72	27.14
EER87935	Sorghum	endoplasmic reticulum, vacuole	34.04	26.12
EER96860	Sorghum	cytosol, mitochondrion	25.0	25.54
EES00360	Sorghum	cytosol	27.13	24.76
EES02048	Sorghum	plastid	25.0	24.61
KXG27695	Sorghum	plastid	25.53	24.37
EES16521	Sorghum	plastid	24.47	21.5

Protein Annotations

Gene3D:1.10.238.10	MapMan:35.1	EntrezGene:8083673	UniProt:C5X1N3	EnsemblPlants:EER92319	ProteinID:EER92319
ProteinID:EER92319.1	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	GO:GO:0003674	GO:GO:0005488
GO:GO:0005509	InterPro:IPR002048	PFAM:PF13405	PFAM:PF13499	ScanProsite:PS00018	PFscan:PS50222
PANTHER:PTHR45003	PANTHER:PTHR45003:SF1	SMART:SM00054	EnsemblPlantsGene:SORBI_3001G383800	SUPFAM:SSF47473	unigene:Sbi.3612
UniParc:UPI0001A82A39	RefSeq:XP_002465321.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:67122589..67126203

Molecular Weight (calculated)

20220.8 Da

IEP (calculated)

4.064

GRAVY (calculated)

-0.218

Length

188 amino acids

Sequence
(BLAST)

001: MENAAPAIAE PSLSKKPSPS FRLRNGSLDA LRLRRVFDLF DRNGDGEITL DEMASALDAL GLGADRSALE AAVGGYVPAG AAGLRFEDFE SLDRALGDAL
101: FGAVLEEVPE EEEDEGDLKE AFRVFDEDGD GFISAAELQA VLKKLGLPEA RSLASVQEMI CNVDRNCDGR VDFGEFKNMM QGITMRGA

Best Arabidopsis Sequence Match ( AT4G20780.1 )
(BLAST)

001: MESNNNEKKK VARQSSSFRL RSPSLNALRL QRIFDLFDKN GDGFITVEEL SQALTRLGLN ADLSDLKSTV ESYIQPGNTG LNFDDFSSLH KTLDDSFFGG
101: ACGGGENEDD PSSAAENESD LAEAFKVFDE NGDGFISARE LQTVLKKLGL PEGGEMERVE KMIVSVDRNQ DGRVDFFEFK NMMRTVVIPS S

Arabidopsis Description

CML42Calcium-binding protein CML42 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVG9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.