CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 3
cytosol 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES01073
EES02247
OQU78515

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G41410.1	EES01073	AT2G42580.1	19000166
AT2G41410.1	EES02247	AT2G42580.1	19000166
AT2G41410.1	OQU78515	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d042108_P001	Maize	cytosol, plastid	81.68	81.25
TraesCS3A01G488700.1	Wheat	nucleus, plastid	71.2	70.83
TraesCS3D01G484600.1	Wheat	cytosol, plastid	71.2	69.74
TraesCS3B01G536600.1	Wheat	nucleus, plastid	69.63	67.51
Os01t0949300-01	Rice	plasma membrane	70.68	66.18
HORVU3Hr1G106950.3	Barley	cytosol	69.63	49.26
KXG27695	Sorghum	plastid	45.55	44.16
GSMUA_Achr8P09680_001	Banana	plastid	41.88	39.6
EES16521	Sorghum	plastid	42.93	38.32
PGSC0003DMT400076709	Potato	mitochondrion	39.27	35.55
Bra016936.1-P	Field mustard	cytosol	18.85	34.29
KRH66816	Soybean	plastid	38.74	33.79
Solyc10g079420.1.1	Tomato	nucleus, plastid	36.13	33.66
PGSC0003DMT400021079	Potato	cytosol, mitochondrion, plastid	36.13	33.66
VIT_08s0007g05790.t01	Wine grape	mitochondrion, plastid	38.74	33.33
KRG95139	Soybean	plastid	37.7	33.03
CDY23852	Canola	cytosol, mitochondrion, plastid	36.65	32.86
CDX79938	Canola	cytosol, mitochondrion, plastid	36.13	32.39
Bra004620.1-P	Field mustard	cytosol, mitochondrion, plastid	36.13	32.39
CDY06925	Canola	cytosol, mitochondrion, plastid	35.6	31.34
AT3G10190.1	Thale cress	cytosol, mitochondrion	34.03	31.1
AT2G41410.1	Thale cress	cytosol, mitochondrion, plastid	35.08	31.02
CDY14768	Canola	cytosol, mitochondrion, plastid	35.08	30.88
CDY60169	Canola	cytosol, plastid	32.98	30.29
PGSC0003DMT400027581	Potato	cytosol, plastid	34.03	30.09
Bra029821.1-P	Field mustard	plastid	32.46	29.81
OQU78964	Sorghum	cytosol	25.65	29.7
EES04217	Sorghum	cytosol, mitochondrion, plastid	28.8	29.1
CDY00910	Canola	cytosol, plastid	32.98	28.9
EES19251	Sorghum	cytosol	26.7	28.49
Solyc04g018110.1.1	Tomato	plastid	35.6	28.1
EER96860	Sorghum	cytosol, mitochondrion	24.61	25.54
EES00360	Sorghum	cytosol	27.23	25.24
KXG39446	Sorghum	plastid	25.13	25.13
EER92319	Sorghum	cytosol	24.61	25.0
EES19444	Sorghum	plastid	25.65	24.62
EER97743	Sorghum	plastid	24.61	23.62
EES11048	Sorghum	plastid	27.23	21.85
EER87935	Sorghum	endoplasmic reticulum, vacuole	27.75	21.63

Protein Annotations

Gene3D:1.10.238.10	MapMan:35.2	EntrezGene:8062319	UniProt:C5XHU8	EnsemblPlants:EES02048	ProteinID:EES02048
ProteinID:EES02048.1	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	GO:GO:0003674	GO:GO:0005488
GO:GO:0005509	InterPro:IPR002048	PFAM:PF13499	ScanProsite:PS00018	PFscan:PS50222	PANTHER:PTHR10891
PANTHER:PTHR10891:SF739	SMART:SM00054	EnsemblPlantsGene:SORBI_3003G425200	SUPFAM:SSF47473	unigene:Sbi.14501	UniParc:UPI0001A84B41
RefSeq:XP_002456928.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:72967861..72968921

Molecular Weight (calculated)

20064.6 Da

IEP (calculated)

4.604

GRAVY (calculated)

-0.407

Length

191 amino acids

Sequence
(BLAST)

001: MKLSMQSLAR KLSLPSPTKR DAGGEGGKKN KKRSLSRGET PSFASSSSSS SDDALARSST PRSVLPPPAA PLEIPRRELE AVLRRLGHAE PSDAELDAVA
101: ALAAQPPPAD GDGDDLMEAF RVFDADGDGR ITAEELRAVL EGILGGGPDA CSLDDCRRMI GGVDADGDGF VGFQDFTRMM MTATADARTF L

Best Arabidopsis Sequence Match ( AT2G41410.1 )
(BLAST)

001: MKLAASLNRL SPKRLFRTKS KASVSRSEPS SFSSNASSSS SDGSYGNLKQ GPTATPISVL PQNSGDFYTE LVQAFKLIDR DDDGVVSRGD LAALISRLSH
101: EPPSQEEVSL MLREVDGGDG GCISLEDLAS RVAGTSGEGS VETEELREVF EIFDVDRNGK ISAEELHRVF GVIGDERCTL EECMRMIATV DGNGDGFVCF
201: DDFCRMMVPA MNDHHH

Arabidopsis Description

CML35Probable calcium-binding protein CML35 [Source:UniProtKB/Swiss-Prot;Acc:P30188]
SUBAcon: [mitochondrion,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.