CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, cytosol

Predictor Summary:

plastid 3
mitochondrion 4
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY42827
CDY51514
CDY55390
CDY61202

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G41410.1	CDY42827	AT2G42580.1	19000166
AT2G41410.1	CDY51514	AT2G42580.1	19000166
AT2G41410.1	CDY55390	AT2G42580.1	19000166
AT2G41410.1	CDY61202	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra004620.1-P	Field mustard	cytosol, mitochondrion, plastid	99.53	99.53
CDY23852	Canola	cytosol, mitochondrion, plastid	96.71	96.71
AT2G41410.1	Thale cress	cytosol, mitochondrion, plastid	82.63	81.48
CDY06925	Canola	cytosol, mitochondrion, plastid	79.34	77.88
CDY14768	Canola	cytosol, mitochondrion, plastid	79.34	77.88
VIT_08s0007g05790.t01	Wine grape	mitochondrion, plastid	56.81	54.5
KRG95139	Soybean	plastid	54.46	53.21
CDY60169	Canola	cytosol, plastid	51.64	52.88
KRH66816	Soybean	plastid	53.52	52.05
CDY00910	Canola	cytosol, plastid	52.11	50.92
TraesCS5B01G134200.1	Wheat	cytosol	20.66	48.89
Solyc10g079420.1.1	Tomato	nucleus, plastid	46.48	48.29
PGSC0003DMT400021079	Potato	cytosol, mitochondrion, plastid	46.01	47.8
PGSC0003DMT400076709	Potato	mitochondrion	45.07	45.5
PGSC0003DMT400027581	Potato	cytosol, plastid	44.6	43.98
GSMUA_Achr8P09680_001	Banana	plastid	40.85	43.07
Solyc04g018110.1.1	Tomato	plastid	46.48	40.91
Os11t0141400-01	Rice	cytosol	34.74	39.36
TraesCS3A01G488700.1	Wheat	nucleus, plastid	34.27	38.02
EES16521	Sorghum	plastid	38.03	37.85
HORVU5Hr1G043460.1	Barley	plastid	32.39	37.7
TraesCS5D01G141900.1	Wheat	plastid	32.39	37.7
Zm00001d042108_P001	Maize	cytosol, plastid	33.8	37.5
TraesCS3D01G484600.1	Wheat	cytosol, plastid	34.27	37.44
Zm00001d004972_P001	Maize	plastid	32.86	37.43
TraesCS3B01G536600.1	Wheat	nucleus, plastid	34.27	37.06
EES02048	Sorghum	plastid	32.39	36.13
KXG27695	Sorghum	plastid	33.33	36.04
CDY27652	Canola	cytosol	26.76	35.85
Os01t0949300-01	Rice	plasma membrane	34.27	35.78
CDX99691	Canola	cytosol	26.29	35.44
CDX96150	Canola	cytosol	24.88	34.64
CDY55679	Canola	cytosol	24.41	33.99
CDY60818	Canola	cytosol	23.0	32.89
Os12t0138050-00	Rice	plastid	36.62	32.77
CDY22119	Canola	cytosol	23.0	32.24
CDY07993	Canola	cytosol	23.0	32.03
CDX86544	Canola	cytosol	22.54	31.79
CDY63788	Canola	cytosol	22.54	31.79
CDX72996	Canola	cytosol	23.47	31.45
CDX96488	Canola	cytosol	23.47	31.45
CDX74043	Canola	cytosol	22.54	31.37
CDY37233	Canola	plastid	27.7	31.22
CDY66855	Canola	plastid	27.7	31.22
CDY21953	Canola	cytosol	22.07	30.92
CDY33702	Canola	cytosol	22.07	30.92
CDY39714	Canola	cytosol	22.07	30.92
GSMUA_Achr8P00110_001	Banana	endoplasmic reticulum, golgi	41.78	30.9
CDX90890	Canola	cytosol	22.07	30.52
CDY40786	Canola	cytosol	25.82	29.89
CDY03874	Canola	cytosol	25.82	29.89
CDX96729	Canola	cytosol	23.94	29.31
CDX83860	Canola	cytosol	23.94	28.81
CDY19196	Canola	cytosol	23.94	28.81
CDY70127	Canola	cytosol	22.54	28.74
CDX84967	Canola	cytosol	24.88	28.04
CDY27574	Canola	cytosol	24.88	27.75
CDY23356	Canola	vacuole	27.23	27.49
CDY36129	Canola	cytosol	23.94	27.27
CDY30399	Canola	extracellular	26.76	27.14
HORVU3Hr1G106950.3	Barley	cytosol	33.8	26.67
CDY17950	Canola	cytosol	20.66	26.51
CDY49013	Canola	cytosol	22.54	26.37
CDX94789	Canola	cytosol	22.54	26.37
CDY14927	Canola	cytosol	22.54	26.37
CDY06002	Canola	extracellular, vacuole	24.41	26.26
CDX67796	Canola	vacuole	24.88	26.11
CDX98375	Canola	endoplasmic reticulum	24.88	25.98
CDY72611	Canola	extracellular, vacuole	23.94	25.5
CDX83488	Canola	extracellular	25.35	25.23
CDY31433	Canola	cytosol, plastid	21.6	25.0
CDX76451	Canola	cytosol, plastid	21.6	25.0
CDX96968	Canola	cytosol	22.54	24.87
CDX94006	Canola	cytosol	21.6	24.73
CDX82773	Canola	cytosol	20.66	23.04
CDX79002	Canola	cytosol	20.19	22.87
CDY44217	Canola	endoplasmic reticulum, golgi	25.82	19.5
CDX98672	Canola	cytosol	23.0	19.29
CDY24421	Canola	endoplasmic reticulum, golgi	23.94	18.82

Protein Annotations

EnsemblPlants:CDX79938	EnsemblPlantsGene:GSBRNA2T00132795001	Gene3D:1.10.238.10	GO:A0A078CXT5	GO:GO:0003674	GO:GO:0005488
GO:GO:0005509	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	InterPro:IPR002048	PANTHER:PTHR10891
PANTHER:PTHR10891:SF739	PFAM:PF13499	PFscan:PS50222	ProteinID:CDX79938	ProteinID:CDX79938.1	ScanProsite:PS00018
SEG:seg	SMART:SM00054	SUPFAM:SSF47473	UniParc:UPI0004EDF022	MapMan:35.1	:

Description

BnaA05g02180D

Coordinates

chrLK031819:+:917237..918126

Molecular Weight (calculated)

23214.1 Da

IEP (calculated)

4.476

GRAVY (calculated)

-0.391

Length

213 amino acids

Sequence
(BLAST)

001: MKLAASLKRV FRSKSKGSVS RSEPSSFSSA ASSSSSDGGS YGKLKPGPAA TPVSVLPQSS GDFYSELVEA FKLIDRDDDG VVSRKDLAAL LSRLSPEPPS
101: PEEVSMMLRE VDADGCISLE ELASRVAGTS SGEGCIETEE MREVFEFFDA DRDGRISAEE LHRVFGVIGD ERCTLEDCVR MIATVDRNGD GFVRFDDFRR
201: MMELQAPAMN DHH

Best Arabidopsis Sequence Match ( AT2G41410.1 )
(BLAST)

001: MKLAASLNRL SPKRLFRTKS KASVSRSEPS SFSSNASSSS SDGSYGNLKQ GPTATPISVL PQNSGDFYTE LVQAFKLIDR DDDGVVSRGD LAALISRLSH
101: EPPSQEEVSL MLREVDGGDG GCISLEDLAS RVAGTSGEGS VETEELREVF EIFDVDRNGK ISAEELHRVF GVIGDERCTL EECMRMIATV DGNGDGFVCF
201: DDFCRMMVPA MNDHHH

Arabidopsis Description

CML35Probable calcium-binding protein CML35 [Source:UniProtKB/Swiss-Prot;Acc:P30188]
SUBAcon: [mitochondrion,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.