Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 3
- extracellular 1
- mitochondrion 1
- cytosol 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os01t0218200-00 | |
| Os05t0210600-01 | |
| Os05t0587300-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G41410.1 | Os01t0218200-00 | AT2G42580.1 | 19000166 |
| AT2G41410.1 | Os05t0210600-01 | AT2G42580.1 | 19000166 |
| AT2G41410.1 | Os05t0587300-01 | AT2G42580.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G134200.1 | Wheat | cytosol | 38.83 | 81.11 |
| Os12t0138050-00 | Rice | plastid | 93.62 | 73.95 |
| TraesCS5D01G141900.1 | Wheat | plastid | 65.96 | 67.76 |
| HORVU5Hr1G043460.1 | Barley | plastid | 62.23 | 63.93 |
| KXG27695 | Sorghum | plastid | 65.43 | 62.44 |
| Zm00001d004972_P001 | Maize | plastid | 57.45 | 57.75 |
| Bra016936.1-P | Field mustard | cytosol | 25.0 | 44.76 |
| Os01t0949300-01 | Rice | plasma membrane | 44.15 | 40.69 |
| AT3G10190.1 | Thale cress | cytosol, mitochondrion | 41.49 | 37.32 |
| CDY60169 | Canola | cytosol, plastid | 39.36 | 35.58 |
| Bra029821.1-P | Field mustard | plastid | 39.36 | 35.58 |
| Bra004620.1-P | Field mustard | cytosol, mitochondrion, plastid | 39.36 | 34.74 |
| CDX79938 | Canola | cytosol, mitochondrion, plastid | 39.36 | 34.74 |
| CDY14768 | Canola | cytosol, mitochondrion, plastid | 39.89 | 34.56 |
| CDY06925 | Canola | cytosol, mitochondrion, plastid | 39.89 | 34.56 |
| CDY00910 | Canola | cytosol, plastid | 39.89 | 34.4 |
| CDY23852 | Canola | cytosol, mitochondrion, plastid | 38.83 | 34.27 |
| KRH66816 | Soybean | plastid | 39.89 | 34.25 |
| KRG95139 | Soybean | plastid | 38.83 | 33.49 |
| AT2G41410.1 | Thale cress | cytosol, mitochondrion, plastid | 36.7 | 31.94 |
| GSMUA_Achr8P00110_001 | Banana | endoplasmic reticulum, golgi | 48.94 | 31.94 |
| Solyc10g079420.1.1 | Tomato | nucleus, plastid | 34.57 | 31.71 |
| VIT_08s0007g05790.t01 | Wine grape | mitochondrion, plastid | 37.23 | 31.53 |
| PGSC0003DMT400021079 | Potato | cytosol, mitochondrion, plastid | 34.04 | 31.22 |
| PGSC0003DMT400076709 | Potato | mitochondrion | 34.04 | 30.33 |
| Os05t0223000-01 | Rice | plasma membrane | 29.79 | 29.63 |
| Os01t0135700-01 | Rice | plasma membrane | 28.19 | 29.28 |
| Os01t0949500-01 | Rice | plasma membrane | 28.19 | 28.65 |
| Os04t0492800-01 | Rice | cytosol, mitochondrion, nucleus, plastid | 28.72 | 27.55 |
| Os12t0228800-01 | Rice | cytosol | 24.47 | 27.38 |
| Os09t0458700-01 | Rice | cytosol, mitochondrion | 26.6 | 27.03 |
| PGSC0003DMT400027581 | Potato | cytosol, plastid | 30.85 | 26.85 |
| Solyc04g018110.1.1 | Tomato | plastid | 34.04 | 26.45 |
| Os05t0380900-01 | Rice | cytosol, mitochondrion | 27.13 | 25.37 |
| Os08t0144100-01 | Rice | plasma membrane | 26.06 | 25.0 |
| Os07t0681400-01 | Rice | cytosol | 25.53 | 24.37 |
| Os03t0331700-02 | Rice | plasma membrane | 24.47 | 24.21 |
| Os06t0172200-02 | Rice | plasma membrane | 28.72 | 22.88 |
| Os05t0312600-01 | Rice | cytosol, plastid | 23.4 | 22.34 |
Protein Annotations
| EnsemblPlants:Os11t0141400-01 | EnsemblPlantsGene:Os11g0141400 | Gene3D:1.10.238.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005509 |
| InterPro:EF-hand-dom_pair | InterPro:EF_Hand_1_Ca_BS | InterPro:EF_hand_dom | InterPro:IPR002048 | PANTHER:PTHR10891 | PANTHER:PTHR10891:SF739 |
| PFAM:PF13499 | PFscan:PS50222 | ProteinID:BAT12618.1 | ScanProsite:PS00018 | SEG:seg | SMART:SM00054 |
| SUPFAM:SSF47473 | UniParc:UPI000393AECE | UniProt:A0A0N7KSE8 | MapMan:35.1 | : | : |
Description
Similar to EF hand family protein, expressed. (Os11t0141400-01)
Coordinates
chr11:+:1931458..1932198
Molecular Weight (calculated)
19354.4 Da
IEP (calculated)
4.460
GRAVY (calculated)
-0.167
Length
188 amino acids
Sequence
(BLAST)
(BLAST)
001: FGSSSSSSSS SSKKRRKKRR SGAKSCSFGS TTSSSSSSLA ASSSDDSAAT TPRSVLPASA AASSSGTKKP AAVAVTREDL EVALRRIVSS KEELAAMLAE
101: AECAGELVLE EIAAAAADEG ELKETFAVFD ADGDGRISAE ELRAVLASLG DELCSVDDCR RMIGGVDTDG DGFVCFDEFA RMMMYGCA
101: AECAGELVLE EIAAAAADEG ELKETFAVFD ADGDGRISAE ELRAVLASLG DELCSVDDCR RMIGGVDTDG DGFVCFDEFA RMMMYGCA
001: MKLAKLIPKR FFIRSKDRST VSKSPTAFSF GSASSSSGQD CKNSGGDGGG GSVTPTSILP EVPSPYSYVE ILQAFKLIDR DNDGAVSRHD LESLLSRLGP
101: DPLTEEEINV MLKEVDCDGD GTIRLEELAS RVVSLDPARD STELKETFEF FDADRDGLIS ADELLRVFST IGDERCTLDD CKRMIADVDE DGDGFVCFTE
201: FSRMMDLQR
101: DPLTEEEINV MLKEVDCDGD GTIRLEELAS RVVSLDPARD STELKETFEF FDADRDGLIS ADELLRVFST IGDERCTLDD CKRMIADVDE DGDGFVCFTE
201: FSRMMDLQR
Arabidopsis Description
CML36Probable calcium-binding protein CML36 [Source:UniProtKB/Swiss-Prot;Acc:Q9SS31]
SUBAcon: [mitochondrion,cytosol]
SUBAcon: [mitochondrion,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.