Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 2
- cytosol 1
- vacuole 1
- plastid 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| plasma membrane:
28056797
|
msms PMID:
28056797
doi
Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os02t0122600-00 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G20780.1 | Os02t0122600-00 | AT2G46600.1 | 19720824 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os07t0681400-01 | Rice | cytosol | 81.63 | 81.22 |
| TraesCS7D01G302700.1 | Wheat | plastid | 81.12 | 81.12 |
| HORVU7Hr1G072770.1 | Barley | plastid | 81.63 | 80.81 |
| TraesCS7B01G206200.1 | Wheat | plastid | 80.61 | 79.8 |
| TraesCS7A01G306000.1 | Wheat | plastid | 79.59 | 79.59 |
| Zm00001d022430_P001 | Maize | cytosol, plastid | 78.06 | 76.5 |
| EER97743 | Sorghum | plastid | 77.55 | 76.38 |
| Zm00001d007181_P001 | Maize | plastid | 78.57 | 75.86 |
| Os03t0331700-02 | Rice | plasma membrane | 72.96 | 75.26 |
| GSMUA_Achr8P01570_001 | Banana | cytosol | 63.78 | 67.57 |
| AT5G44460.1 | Thale cress | cytosol | 52.04 | 56.35 |
| Bra033745.1-P | Field mustard | cytosol | 52.04 | 56.04 |
| CDX94789 | Canola | cytosol | 51.53 | 55.49 |
| CDY49013 | Canola | cytosol | 51.53 | 55.49 |
| AT4G20780.1 | Thale cress | cytosol | 52.04 | 53.4 |
| CDX94006 | Canola | cytosol | 50.0 | 52.69 |
| CDX79002 | Canola | cytosol | 50.51 | 52.66 |
| Bra013470.1-P | Field mustard | cytosol | 50.51 | 52.66 |
| CDY14927 | Canola | cytosol | 48.47 | 52.2 |
| Bra039511.1-P | Field mustard | cytosol | 48.47 | 52.2 |
| CDY31433 | Canola | cytosol, plastid | 48.47 | 51.63 |
| CDX82773 | Canola | cytosol | 50.0 | 51.31 |
| Bra020916.1-P | Field mustard | cytosol, plastid | 47.96 | 51.09 |
| CDX76451 | Canola | cytosol, plastid | 47.96 | 51.09 |
| VIT_08s0056g00290.t01 | Wine grape | cytosol, mitochondrion | 49.49 | 50.52 |
| Solyc10g074740.1.1 | Tomato | cytosol, plastid | 50.0 | 49.25 |
| CDX96968 | Canola | cytosol | 48.47 | 49.22 |
| KRH40630 | Soybean | mitochondrion | 45.92 | 49.18 |
| PGSC0003DMT400071219 | Potato | cytosol, plastid | 48.47 | 47.74 |
| Os05t0312600-01 | Rice | cytosol, plastid | 45.92 | 45.69 |
| Os12t0228800-01 | Rice | cytosol | 35.2 | 41.07 |
| CDX98672 | Canola | cytosol | 49.49 | 38.19 |
| Bra038801.1-P | Field mustard | cytosol | 49.49 | 37.16 |
| Os04t0492800-01 | Rice | cytosol, mitochondrion, nucleus, plastid | 34.69 | 34.69 |
| Os01t0949500-01 | Rice | plasma membrane | 30.61 | 32.43 |
| Os01t0135700-01 | Rice | plasma membrane | 28.57 | 30.94 |
| Os05t0223000-01 | Rice | plasma membrane | 28.06 | 29.1 |
| Os05t0380900-01 | Rice | cytosol, mitochondrion | 29.08 | 28.36 |
| Os09t0458700-01 | Rice | cytosol, mitochondrion | 26.53 | 28.11 |
| Os11t0141400-01 | Rice | cytosol | 25.0 | 26.06 |
| Os06t0172200-02 | Rice | plasma membrane | 31.12 | 25.85 |
| Os01t0949300-01 | Rice | plasma membrane | 23.47 | 22.55 |
| Os12t0138050-00 | Rice | plastid | 25.51 | 21.01 |
Protein Annotations
| Gene3D:1.10.238.10 | MapMan:35.1 | EntrezGene:4344651 | EMBL:AK071435 | ProteinID:BAC66766.1 | ProteinID:BAD33524.1 |
| ProteinID:BAF22897.1 | ProteinID:BAT03809.1 | InterPro:EF-hand-dom_pair | InterPro:EF_Hand_1_Ca_BS | InterPro:EF_hand_dom | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005509 | GO:GO:0046872 | InterPro:IPR002048 | EnsemblPlantsGene:Os08g0144100 | EnsemblPlants:Os08t0144100-01 |
| PFAM:PF13405 | PFAM:PF13499 | ScanProsite:PS00018 | PFscan:PS50222 | PANTHER:PTHR45003 | PANTHER:PTHR45003:SF2 |
| UniProt:Q84UL5 | SMART:SM00054 | SUPFAM:SSF47473 | UniParc:UPI000017D1F7 | RefSeq:XP_015649587.1 | SEG:seg |
Description
CALMODULIN-LIKE PROTEIN 32Similar to Avr9/Cf-9 rapidly elicited protein 31. (Os08t0144100-01)
Coordinates
chr8:+:2495080..2496009
Molecular Weight (calculated)
20645.2 Da
IEP (calculated)
4.265
GRAVY (calculated)
-0.155
Length
196 amino acids
Sequence
(BLAST)
(BLAST)
001: MDAKQSVAAA KPSLAKKTAS ASFRLRNGSL NAVRLRRVFD LFDRNGDGEI TVDELAQALD ALGLVADRDG LAATVSAYVP EGAAGLRFED FDALHRALGD
101: ALFGSLDGAA AAGEPGGGGG DEEEEMREAF KVFDVDGDGF ISASELQEVL KKLGLPEAGS LATVREMICN VDRNSDGRVD FGEFKSMMQG ITVWGP
101: ALFGSLDGAA AAGEPGGGGG DEEEEMREAF KVFDVDGDGF ISASELQEVL KKLGLPEAGS LATVREMICN VDRNSDGRVD FGEFKSMMQG ITVWGP
001: MESNNNEKKK VARQSSSFRL RSPSLNALRL QRIFDLFDKN GDGFITVEEL SQALTRLGLN ADLSDLKSTV ESYIQPGNTG LNFDDFSSLH KTLDDSFFGG
101: ACGGGENEDD PSSAAENESD LAEAFKVFDE NGDGFISARE LQTVLKKLGL PEGGEMERVE KMIVSVDRNQ DGRVDFFEFK NMMRTVVIPS S
101: ACGGGENEDD PSSAAENESD LAEAFKVFDE NGDGFISARE LQTVLKKLGL PEGGEMERVE KMIVSVDRNQ DGRVDFFEFK NMMRTVVIPS S
Arabidopsis Description
CML42Calcium-binding protein CML42 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVG9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.