CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
cytosol 3
plasma membrane 1
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG97213
KRH06431
KRH47865
KRH68937

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G20780.1	KRG97213	AT2G46600.1	19720824
AT4G20780.1	KRH06431	AT2G46600.1	19720824
AT4G20780.1	KRH47865	AT2G46600.1	19720824
AT4G20780.1	KRH68937	AT2G46600.1	19720824

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_08s0056g00290.t01	Wine grape	cytosol, mitochondrion	61.75	58.85
PGSC0003DMT400071219	Potato	cytosol, plastid	62.3	57.29
Solyc10g074740.1.1	Tomato	cytosol, plastid	61.75	56.78
Bra033745.1-P	Field mustard	cytosol	56.28	56.59
CDX94789	Canola	cytosol	56.28	56.59
AT4G20780.1	Thale cress	cytosol	58.47	56.02
CDX94006	Canola	cytosol	56.83	55.91
AT5G44460.1	Thale cress	cytosol	55.19	55.8
CDY14927	Canola	cytosol	55.19	55.49
CDY49013	Canola	cytosol	55.19	55.49
Bra039511.1-P	Field mustard	cytosol	55.19	55.49
CDX79002	Canola	cytosol	56.83	55.32
Bra013470.1-P	Field mustard	cytosol	56.83	55.32
CDY31433	Canola	cytosol, plastid	54.64	54.35
CDX82773	Canola	cytosol	56.28	53.93
CDX76451	Canola	cytosol, plastid	54.1	53.8
Bra020916.1-P	Field mustard	cytosol, plastid	54.1	53.8
CDX96968	Canola	cytosol	55.74	52.85
GSMUA_Achr8P01570_001	Banana	cytosol	51.37	50.81
TraesCS4B01G172400.1	Wheat	plastid	51.37	49.74
TraesCS4D01G174400.1	Wheat	plastid	51.37	49.74
TraesCS4A01G132300.1	Wheat	plastid	50.82	48.69
Os03t0331700-02	Rice	plasma membrane	50.27	48.42
HORVU4Hr1G050990.1	Barley	plastid	50.82	48.19
TraesCS2B01G120900.1	Wheat	plastid	50.27	48.17
TraesCS2A01G103600.1	Wheat	plastid	50.27	48.17
TraesCS2D01G103400.1	Wheat	plastid	49.73	47.64
Zm00001d047535_P001	Maize	plastid	48.63	47.59
TraesCS7A01G306000.1	Wheat	plastid	50.82	47.45
TraesCS7D01G302700.1	Wheat	plastid	50.82	47.45
Zm00001d029028_P001	Maize	plastid	48.63	47.34
KXG39446	Sorghum	plastid	49.18	47.12
TraesCS7B01G206200.1	Wheat	plastid	50.82	46.97
EER92319	Sorghum	cytosol	48.09	46.81
EER97743	Sorghum	plastid	50.82	46.73
HORVU7Hr1G072770.1	Barley	plastid	50.27	46.46
Os08t0144100-01	Rice	plasma membrane	49.18	45.92
TraesCS5D01G348900.1	Wheat	cytosol	40.44	45.4
Zm00001d007181_P001	Maize	plastid	50.27	45.32
Os07t0681400-01	Rice	cytosol	48.63	45.18
Zm00001d022430_P001	Maize	cytosol, plastid	49.18	45.0
TraesCS5A01G343000.1	Wheat	cytosol, mitochondrion	39.89	44.51
TraesCS5B01G342800.1	Wheat	cytosol	39.34	44.44
CDX98672	Canola	cytosol	58.47	42.13
HORVU5Hr1G085800.2	Barley	cytosol	39.89	41.71
Bra038801.1-P	Field mustard	cytosol	58.47	41.0
KRG95097	Soybean	cytosol	31.69	38.16
KRH29625	Soybean	cytosol	21.86	37.74
KRH73006	Soybean	cytosol	28.96	37.59
Os05t0312600-01	Rice	cytosol, plastid	40.44	37.56
KRH66763	Soybean	cytosol	31.15	37.5
KRH17370	Soybean	cytosol	28.42	36.88
KRG97926	Soybean	cytosol	27.32	35.97
KRH30955	Soybean	cytosol	26.78	35.77
KRH16247	Soybean	cytosol	22.4	31.3
KRH23209	Soybean	cytosol, mitochondrion	31.15	30.98
KRH75577	Soybean	cytosol	25.14	30.26
KRH41828	Soybean	cytosol	29.51	30.0
KRH24162	Soybean	cytosol	22.4	29.29
KRH60410	Soybean	cytosol, plastid	30.05	29.26
KRH02767	Soybean	cytosol	24.04	28.95
KRH10131	Soybean	endoplasmic reticulum	32.79	28.44
KRH49632	Soybean	cytosol, mitochondrion, plastid	27.87	28.02
KRH50269	Soybean	mitochondrion	27.87	27.57
KRH71148	Soybean	cytosol	27.87	27.57
KRH48613	Soybean	cytosol	26.78	27.37
KRH00581	Soybean	plastid	33.33	27.35
KRH76288	Soybean	plastid	31.69	27.1
KRH24625	Soybean	cytosol	32.24	26.7
KRH15405	Soybean	cytosol	20.77	26.39
KRH28478	Soybean	cytosol, plastid	26.78	26.2
KRH20147	Soybean	extracellular	32.24	25.76
KRH65252	Soybean	plastid	30.05	25.7
KRH37459	Soybean	cytosol	14.21	25.49
KRH57807	Soybean	plastid	26.23	25.4
KRH03663	Soybean	endoplasmic reticulum, extracellular	31.69	25.33
KRH76994	Soybean	cytosol, plastid	25.68	25.13
KRH04628	Soybean	plastid	25.68	24.74
KRH60530	Soybean	plastid	28.96	24.54
KRG95139	Soybean	plastid	25.14	21.1
KRH66816	Soybean	plastid	25.14	21.0

Protein Annotations

Gene3D:1.10.238.10	EntrezGene:100807117	MapMan:35.1	UniProt:A0A0R0IE10	EMBL:ACUP02006044	InterPro:EF-hand-dom_pair
InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	EnsemblPlantsGene:GLYMA_09G270900	GO:GO:0003674	GO:GO:0005488	GO:GO:0005509
InterPro:IPR002048	EnsemblPlants:KRH40630	ProteinID:KRH40630	ProteinID:KRH40630.1	PFAM:PF13405	PFAM:PF13499
ScanProsite:PS00018	PFscan:PS50222	PANTHER:PTHR45003	PANTHER:PTHR45003:SF2	SMART:SM00054	SUPFAM:SSF47473
UniParc:UPI0001B63782	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:+:48774008..48775186

Molecular Weight (calculated)

20522.4 Da

IEP (calculated)

4.235

GRAVY (calculated)

-0.304

Length

183 amino acids

Sequence
(BLAST)

001: MVMGQQKIAL APPSSSFRLR SRSLNSLRLR RIFDMFDKNG DGTITVTEIS QALSLLGLDA DVAELESMTK LYIRPGNEGL TYEDFMALHE SLGETYFGLV
101: QDEEEQQQDS DLWEAFKVFD ENGDGYISAK ELQMVLGKLG LVEGNLMDNV HRMIGSVDTN HDGRVDFDEF KEMMRATIVP ASA

Best Arabidopsis Sequence Match ( AT4G20780.1 )
(BLAST)

001: MESNNNEKKK VARQSSSFRL RSPSLNALRL QRIFDLFDKN GDGFITVEEL SQALTRLGLN ADLSDLKSTV ESYIQPGNTG LNFDDFSSLH KTLDDSFFGG
101: ACGGGENEDD PSSAAENESD LAEAFKVFDE NGDGFISARE LQTVLKKLGL PEGGEMERVE KMIVSVDRNQ DGRVDFFEFK NMMRTVVIPS S

Arabidopsis Description

CML42Calcium-binding protein CML42 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVG9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.