Factsheet for Bra020916.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 3
cytosol 3
mitochondrion 2
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000430.1-P
Bra004524.1-P
Bra039271.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G20780.1	Bra000430.1-P	AT2G46600.1	19720824
AT4G20780.1	Bra004524.1-P	AT2G46600.1	19720824
AT4G20780.1	Bra039271.1-P	AT2G46600.1	19720824

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX76451	Canola	cytosol, plastid	100.0	100.0
CDY31433	Canola	cytosol, plastid	99.46	99.46
Bra013470.1-P	Field mustard	cytosol	81.52	79.79
AT4G20780.1	Thale cress	cytosol	81.52	78.53
Bra033745.1-P	Field mustard	cytosol	69.57	70.33
Bra039511.1-P	Field mustard	cytosol	64.13	64.84
Solyc10g074740.1.1	Tomato	cytosol, plastid	63.04	58.29
PGSC0003DMT400071219	Potato	cytosol, plastid	61.96	57.29
Bra038801.1-P	Field mustard	cytosol	80.43	56.7
VIT_08s0056g00290.t01	Wine grape	cytosol, mitochondrion	58.15	55.73
KRH40630	Soybean	mitochondrion	53.8	54.1
GSMUA_Achr8P01570_001	Banana	cytosol	53.8	53.51
Zm00001d029028_P001	Maize	plastid	52.72	51.6
EER92319	Sorghum	cytosol	52.17	51.06
KXG39446	Sorghum	plastid	52.72	50.79
Zm00001d047535_P001	Maize	plastid	51.09	50.27
TraesCS4D01G174400.1	Wheat	plastid	51.09	49.74
Os03t0331700-02	Rice	plasma membrane	51.09	49.47
TraesCS4A01G132300.1	Wheat	plastid	50.54	48.69
TraesCS4B01G172400.1	Wheat	plastid	50.0	48.68
EER97743	Sorghum	plastid	52.17	48.24
HORVU4Hr1G050990.1	Barley	plastid	50.54	48.19
TraesCS7D01G302700.1	Wheat	plastid	51.09	47.96
Os08t0144100-01	Rice	plasma membrane	51.09	47.96
TraesCS7B01G206200.1	Wheat	plastid	51.09	47.47
HORVU7Hr1G072770.1	Barley	plastid	51.09	47.47
TraesCS7A01G306000.1	Wheat	plastid	50.54	47.45
TraesCS5D01G348900.1	Wheat	cytosol	41.85	47.24
TraesCS2B01G120900.1	Wheat	plastid	48.91	47.12
TraesCS2A01G103600.1	Wheat	plastid	48.91	47.12
Zm00001d022430_P001	Maize	cytosol, plastid	51.09	47.0
TraesCS5A01G343000.1	Wheat	cytosol, mitochondrion	41.85	46.95
TraesCS5B01G342800.1	Wheat	cytosol	41.3	46.91
Zm00001d007181_P001	Maize	plastid	51.63	46.8
TraesCS2D01G103400.1	Wheat	plastid	48.37	46.6
Os07t0681400-01	Rice	cytosol	48.91	45.69
HORVU5Hr1G085800.2	Barley	cytosol	40.76	42.86
Bra000836.1-P	Field mustard	cytosol	34.24	40.91
Bra040379.1-P	Field mustard	cytosol	32.61	40.27
Os05t0312600-01	Rice	cytosol, plastid	41.85	39.09
Bra001254.1-P	Field mustard	cytosol	31.52	37.91
Bra034907.1-P	Field mustard	cytosol	29.89	36.18
Bra032677.1-P	Field mustard	cytosol	29.35	35.53
Bra019554.1-P	Field mustard	cytosol	31.52	34.32
Bra034870.1-P	Field mustard	cytosol	31.52	34.32
Bra037722.1-P	Field mustard	cytosol	31.52	34.32
Bra035972.1-P	Field mustard	cytosol	20.65	34.23
Bra032785.1-P	Field mustard	cytosol	22.28	32.03
Bra015979.1-P	Field mustard	cytosol	26.63	30.82
Bra025439.1-P	Field mustard	cytosol	26.63	30.62
Bra004165.1-P	Field mustard	cytosol	25.0	30.07
Bra003376.1-P	Field mustard	vacuole	32.61	29.56
Bra016936.1-P	Field mustard	cytosol	16.85	29.52
Bra010974.1-P	Field mustard	cytosol	29.89	29.41
Bra012497.1-P	Field mustard	cytosol	29.35	29.35
Bra007450.1-P	Field mustard	endoplasmic reticulum, vacuole	31.52	29.29
Bra016564.1-P	Field mustard	cytosol	26.09	27.59
Bra039845.1-P	Field mustard	plastid	27.72	26.98
Bra025924.1-P	Field mustard	cytosol	24.46	26.95
Bra004620.1-P	Field mustard	cytosol, mitochondrion, plastid	25.0	21.6
Bra029821.1-P	Field mustard	plastid	23.37	20.67

Protein Annotations

EnsemblPlants:Bra020916.1	EnsemblPlants:Bra020916.1-P	EnsemblPlantsGene:Bra020916	Gene3D:1.10.238.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005509	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	InterPro:IPR002048	PANTHER:PTHR45003
PANTHER:PTHR45003:SF2	PFAM:PF13405	PFAM:PF13499	PFscan:PS50222	ScanProsite:PS00018	SEG:seg
SMART:SM00054	SUPFAM:SSF47473	UniParc:UPI0002545A1A	UniProt:M4DWM2	MapMan:35.1	:

Description

AT4G20780 (E=4e-074) | calcium-binding protein, putative

Coordinates

chrA08:-:11222227..11222781

Molecular Weight (calculated)

20442.0 Da

IEP (calculated)

4.538

GRAVY (calculated)

-0.415

Length

184 amino acids

Sequence
(BLAST)

001: MASNGEKNKK VTSKSPSFSL RSPSLNALRL QRIFDLFDHN GDGFITLEEL SQALSRLGLN ANLSDLKSTV ESYIQPGNTG LNFEDFSSLH KTLDDCFFAG
101: DDDLSSPAAA DESDLAEAFK VFDENGDGFI CARELQAVLK KLGLPEGGEM ERVERMIISV DRNKDGRVDF FEFKNMMRTV KQIS

Best Arabidopsis Sequence Match ( AT4G20780.1 )
(BLAST)

001: MESNNNEKKK VARQSSSFRL RSPSLNALRL QRIFDLFDKN GDGFITVEEL SQALTRLGLN ADLSDLKSTV ESYIQPGNTG LNFDDFSSLH KTLDDSFFGG
101: ACGGGENEDD PSSAAENESD LAEAFKVFDE NGDGFISARE LQTVLKKLGL PEGGEMERVE KMIVSVDRNQ DGRVDFFEFK NMMRTVVIPS S

Arabidopsis Description

CML42Calcium-binding protein CML42 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVG9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.