Factsheet for Bra004620.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, cytosol

Predictor Summary:

plastid 4
mitochondrion 4
cytosol 2
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000267.1-P
Bra004709.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G41410.1	Bra000267.1-P	AT2G42580.1	19000166
AT2G41410.1	Bra004709.1-P	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX79938	Canola	cytosol, mitochondrion, plastid	99.53	99.53
AT2G41410.1	Thale cress	cytosol, mitochondrion, plastid	82.16	81.02
Bra016936.1-P	Field mustard	cytosol	39.91	80.95
VIT_08s0007g05790.t01	Wine grape	mitochondrion, plastid	56.81	54.5
KRG95139	Soybean	plastid	54.46	53.21
Bra029821.1-P	Field mustard	plastid	51.17	52.4
KRH66816	Soybean	plastid	53.52	52.05
TraesCS5B01G134200.1	Wheat	cytosol	20.66	48.89
Solyc10g079420.1.1	Tomato	nucleus, plastid	46.48	48.29
PGSC0003DMT400021079	Potato	cytosol, mitochondrion, plastid	46.01	47.8
PGSC0003DMT400076709	Potato	mitochondrion	45.07	45.5
PGSC0003DMT400027581	Potato	cytosol, plastid	44.6	43.98
GSMUA_Achr8P09680_001	Banana	plastid	40.85	43.07
Solyc04g018110.1.1	Tomato	plastid	46.48	40.91
Os11t0141400-01	Rice	cytosol	34.74	39.36
TraesCS3A01G488700.1	Wheat	nucleus, plastid	34.27	38.02
EES16521	Sorghum	plastid	38.03	37.85
HORVU5Hr1G043460.1	Barley	plastid	32.39	37.7
TraesCS5D01G141900.1	Wheat	plastid	32.39	37.7
Zm00001d042108_P001	Maize	cytosol, plastid	33.8	37.5
TraesCS3D01G484600.1	Wheat	cytosol, plastid	34.27	37.44
Zm00001d004972_P001	Maize	plastid	32.86	37.43
TraesCS3B01G536600.1	Wheat	nucleus, plastid	34.27	37.06
EES02048	Sorghum	plastid	32.39	36.13
KXG27695	Sorghum	plastid	33.33	36.04
Os01t0949300-01	Rice	plasma membrane	34.27	35.78
Bra025439.1-P	Field mustard	cytosol	26.76	35.62
Bra004165.1-P	Field mustard	cytosol	24.88	34.64
Bra035972.1-P	Field mustard	cytosol	17.84	34.23
Bra040379.1-P	Field mustard	cytosol	23.0	32.89
Os12t0138050-00	Rice	plastid	36.62	32.77
Bra001254.1-P	Field mustard	cytosol	23.0	32.03
Bra015979.1-P	Field mustard	cytosol	23.47	31.45
Bra039845.1-P	Field mustard	plastid	27.7	31.22
Bra034907.1-P	Field mustard	cytosol	22.07	30.92
Bra032677.1-P	Field mustard	cytosol	22.07	30.92
GSMUA_Achr8P00110_001	Banana	endoplasmic reticulum, golgi	41.78	30.9
Bra037722.1-P	Field mustard	cytosol	24.41	30.77
Bra034870.1-P	Field mustard	cytosol	24.41	30.77
Bra019554.1-P	Field mustard	cytosol	24.41	30.77
Bra000836.1-P	Field mustard	cytosol	22.07	30.52
Bra016564.1-P	Field mustard	cytosol	24.88	30.46
Bra032785.1-P	Field mustard	cytosol	17.84	29.69
Bra012497.1-P	Field mustard	cytosol	25.35	29.35
Bra025924.1-P	Field mustard	cytosol	22.54	28.74
Bra010974.1-P	Field mustard	cytosol	23.94	27.27
HORVU3Hr1G106950.3	Barley	cytosol	33.8	26.67
Bra033745.1-P	Field mustard	cytosol	22.54	26.37
Bra039511.1-P	Field mustard	cytosol	22.54	26.37
Bra007450.1-P	Field mustard	endoplasmic reticulum, vacuole	24.41	26.26
Bra003376.1-P	Field mustard	vacuole	24.88	26.11
Bra020916.1-P	Field mustard	cytosol, plastid	21.6	25.0
Bra013470.1-P	Field mustard	cytosol	20.19	22.87
Bra038801.1-P	Field mustard	cytosol	22.54	18.39

Protein Annotations

EnsemblPlants:Bra004620.1	EnsemblPlants:Bra004620.1-P	EnsemblPlantsGene:Bra004620	Gene3D:1.10.238.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005509	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	InterPro:IPR002048	PANTHER:PTHR10891
PANTHER:PTHR10891:SF739	PFAM:PF13499	PFscan:PS50222	ScanProsite:PS00018	SEG:seg	SMART:SM00054
SUPFAM:SSF47473	UniParc:UPI0002547692	UniProt:M4CK86	MapMan:35.1	:	:

Description

AT2G41410 (E=4e-066) | calmodulin, putative

Coordinates

chrA05:-:1100846..1101487

Molecular Weight (calculated)

23184.0 Da

IEP (calculated)

4.476

GRAVY (calculated)

-0.403

Length

213 amino acids

Sequence
(BLAST)

001: MKLAASLKRV FRSKSKGSVS RSEPSSFSSA ASSSSSDGGS YGKLKPGPAA TPVSVLPQSS GDFYSELVEA FKLIDRDDDG VVSRKDLAAL LSRLSPEPPS
101: PEEVSMMLRE VDADGCISLE ELASRVAGTS SGEGCIETEE MREVFEFFDA DRDGRISAEE LHRVFGVIGD ERCTLEDCVR MIATVDRNGD GFVRFDDFRR
201: MMELQAPATN DHH

Best Arabidopsis Sequence Match ( AT2G41410.1 )
(BLAST)

001: MKLAASLNRL SPKRLFRTKS KASVSRSEPS SFSSNASSSS SDGSYGNLKQ GPTATPISVL PQNSGDFYTE LVQAFKLIDR DDDGVVSRGD LAALISRLSH
101: EPPSQEEVSL MLREVDGGDG GCISLEDLAS RVAGTSGEGS VETEELREVF EIFDVDRNGK ISAEELHRVF GVIGDERCTL EECMRMIATV DGNGDGFVCF
201: DDFCRMMVPA MNDHHH

Arabidopsis Description

CML35Probable calcium-binding protein CML35 [Source:UniProtKB/Swiss-Prot;Acc:P30188]
SUBAcon: [mitochondrion,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.