Factsheet for PGSC0003DMT400018016

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g050750.1.1	Tomato	cytosol, unclear	98.67	98.67
KRH29625	Soybean	cytosol	54.0	76.42
PGSC0003DMT400071189	Potato	cytosol	74.0	74.5
AT1G05990.1	Thale cress	cytosol	71.33	71.33
CDY63788	Canola	cytosol	70.0	69.54
CDX86544	Canola	cytosol	70.0	69.54
Bra000836.1-P	Field mustard	cytosol	66.67	64.94
CDX90890	Canola	cytosol	66.67	64.94
KRH23209	Soybean	cytosol, mitochondrion	78.0	63.59
CDY22119	Canola	cytosol	62.67	61.84
AT4G03290.1	Thale cress	cytosol	63.33	61.69
Bra035972.1-P	Field mustard	cytosol	45.33	61.26
CDY21953	Canola	cytosol	61.33	60.53
Bra037722.1-P	Field mustard	cytosol	64.67	57.4
Bra034870.1-P	Field mustard	cytosol	64.67	57.4
Bra019554.1-P	Field mustard	cytosol	64.67	57.4
CDY17950	Canola	cytosol	62.67	56.63
KRH10131	Soybean	endoplasmic reticulum	78.67	55.92
PGSC0003DMT400069195	Potato	golgi, plastid	80.67	55.25
VIT_05s0102g00450.t01	Wine grape	endoplasmic reticulum, golgi	77.33	54.21
CDY06002	Canola	extracellular, vacuole	68.0	51.52
Bra007450.1-P	Field mustard	endoplasmic reticulum, vacuole	68.0	51.52
CDY72611	Canola	extracellular, vacuole	68.0	51.0
AT3G59440.1	Thale cress	endoplasmic reticulum, extracellular	66.0	50.77
KRH24625	Soybean	cytosol	74.67	50.68
CDX67796	Canola	vacuole	66.67	49.26
CDX98375	Canola	endoplasmic reticulum	66.67	49.02
Bra003376.1-P	Field mustard	vacuole	66.0	48.77
AT2G43290.1	Thale cress	extracellular	68.67	47.91
CDY30399	Canola	extracellular	64.67	46.19
CDY23356	Canola	vacuole	64.0	45.5
PGSC0003DMT400086334	Potato	cytosol	53.33	45.2
CDX83488	Canola	extracellular	64.0	44.86
PGSC0003DMT400026987	Potato	cytosol	38.0	39.31
PGSC0003DMT400078654	Potato	cytosol	40.0	38.46
PGSC0003DMT400074098	Potato	cytosol	39.33	38.31
PGSC0003DMT400025178	Potato	cytosol	40.0	34.48
CDY44217	Canola	endoplasmic reticulum, golgi	63.33	33.69
PGSC0003DMT400075801	Potato	plastid	43.33	33.51
PGSC0003DMT400079359	Potato	extracellular, golgi	52.0	33.33
PGSC0003DMT400014742	Potato	cytosol	35.33	32.32
PGSC0003DMT400033250	Potato	cytosol	41.33	32.29
PGSC0003DMT400089961	Potato	cytosol	35.33	30.64
PGSC0003DMT400071219	Potato	cytosol, plastid	38.0	28.64
PGSC0003DMT400021079	Potato	cytosol, mitochondrion, plastid	38.0	27.8
PGSC0003DMT400066610	Potato	plastid	33.33	27.03
PGSC0003DMT400076709	Potato	mitochondrion	38.0	27.01
PGSC0003DMT400027581	Potato	cytosol, plastid	36.67	25.46

Protein Annotations

Gene3D:1.10.238.10	EntrezGene:102595420	MapMan:35.1	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom
GO:GO:0003674	GO:GO:0005488	GO:GO:0005509	InterPro:IPR002048	UniProt:M1A9W8	PFAM:PF13499
EnsemblPlantsGene:PGSC0003DMG400006998	PGSC:PGSC0003DMG400006998	EnsemblPlants:PGSC0003DMT400018016	PRINTS:PR01697	ScanProsite:PS00018	PFscan:PS50222
PANTHER:PTHR10891	PANTHER:PTHR10891:SF546	SMART:SM00054	SUPFAM:SSF47473	UniParc:UPI000296D6B1	RefSeq:XP_006345533.1
SEG:seg	:	:	:	:	:

Description

Calcium-binding EF-hand protein [Source:PGSC_GENE;Acc:PGSC0003DMG400006998]

Coordinates

chr5:-:45207866..45208993

Molecular Weight (calculated)

17046.2 Da

IEP (calculated)

4.099

GRAVY (calculated)

-0.495

Length

150 amino acids

Sequence
(BLAST)

001: METDELKRVF HMFDRNGDGR ITKKELNDSL ENMGIFMTDS DLVQMINKID VNGDGYIDID EFGALYETIM EERDEEEDIR EAFNVFDQNG DGYITVDELK
101: SVLASLGLKQ GRTVDDCKRM IKKVDADGDG MVNFIEFKQM MKSGGFAALS

Best Arabidopsis Sequence Match ( AT3G07490.1 )
(BLAST)

001: MDQAELARIF QMFDRNGDGK ITKQELNDSL ENLGIYIPDK DLVQMIEKID LNGDGYVDIE EFGGLYQTIM EERDEEEDMR EAFNVFDQNR DGFITVEELR
101: SVLASLGLKQ GRTLEDCKRM ISKVDVDGDG MVNFKEFKQM MKGGGFAALG SNL

Arabidopsis Description

CML3CML3 [Source:UniProtKB/TrEMBL;Acc:A0A178V7U1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.