Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- vacuole 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY27652 | Canola | cytosol | 85.71 | 86.79 |
| CDX99691 | Canola | cytosol | 85.09 | 86.71 |
| Bra025439.1-P | Field mustard | cytosol | 85.71 | 86.25 |
| AT1G66400.1 | Thale cress | cytosol | 73.29 | 75.16 |
| KRH30955 | Soybean | cytosol | 50.93 | 59.85 |
| KRG97926 | Soybean | cytosol | 50.93 | 58.99 |
| PGSC0003DMT400026987 | Potato | cytosol | 50.31 | 55.86 |
| Solyc02g063350.1.1 | Tomato | cytosol | 49.07 | 54.48 |
| KRH73006 | Soybean | cytosol | 47.2 | 53.9 |
| Solyc02g091500.1.1 | Tomato | cytosol | 52.17 | 53.85 |
| PGSC0003DMT400078654 | Potato | cytosol | 51.55 | 53.21 |
| KRH17370 | Soybean | cytosol | 46.58 | 53.19 |
| VIT_14s0006g01400.t01 | Wine grape | cytosol | 49.07 | 52.67 |
| AT4G12860.1 | Thale cress | cytosol | 39.75 | 42.11 |
| AT1G05990.1 | Thale cress | cytosol | 39.13 | 42.0 |
| AT1G18210.1 | Thale cress | cytosol | 44.1 | 41.76 |
| AT3G07490.1 | Thale cress | cytosol | 38.51 | 40.52 |
| AT1G73630.1 | Thale cress | cytosol | 40.37 | 39.88 |
| AT4G03290.1 | Thale cress | cytosol | 34.78 | 36.36 |
| AT2G15680.1 | Thale cress | plastid | 42.24 | 36.36 |
| AT1G24620.1 | Thale cress | cytosol | 39.13 | 33.87 |
| AT5G44460.1 | Thale cress | cytosol | 33.54 | 29.83 |
| AT3G59440.1 | Thale cress | endoplasmic reticulum, extracellular | 36.02 | 29.74 |
| AT2G43290.1 | Thale cress | extracellular | 39.13 | 29.3 |
| AT4G20780.1 | Thale cress | cytosol | 33.54 | 28.27 |
| AT3G10190.1 | Thale cress | cytosol, mitochondrion | 34.16 | 26.32 |
| AT2G41410.1 | Thale cress | cytosol, mitochondrion, plastid | 32.3 | 24.07 |
Protein Annotations
| Gene3D:1.10.238.10 | PDB:1AVJ | MapMan:35.1 | EntrezGene:833755 | UniProt:A0A178UBB8 | ProteinID:AAB82713.1 |
| ProteinID:AED94229.1 | EMBL:AK227202 | ProteinID:ANM71016.1 | ArrayExpress:AT5G37770 | EnsemblPlantsGene:AT5G37770 | RefSeq:AT5G37770 |
| TAIR:AT5G37770 | RefSeq:AT5G37770-TAIR-G | EnsemblPlants:AT5G37770.1 | TAIR:AT5G37770.1 | EMBL:AY086500 | ProteinID:BAB10353.1 |
| EMBL:BT025709 | InterPro:EF-hand-dom_pair | InterPro:EF_Hand_1_Ca_BS | InterPro:EF_hand_dom | GO:GO:0000003 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005509 | GO:GO:0005575 | GO:GO:0005623 | GO:GO:0005886 | GO:GO:0006950 |
| GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009408 | GO:GO:0009409 | GO:GO:0009605 |
| GO:GO:0009612 | GO:GO:0009628 | GO:GO:0009646 | GO:GO:0009719 | GO:GO:0009733 | GO:GO:0009737 |
| GO:GO:0009791 | GO:GO:0009908 | GO:GO:0009909 | GO:GO:0009987 | GO:GO:0010038 | GO:GO:0016020 |
| GO:GO:0042542 | GO:GO:0045087 | GO:GO:0046872 | GO:GO:0048574 | GO:GO:0051592 | GO:GO:0080164 |
| InterPro:IPR002048 | RefSeq:NP_001318691.1 | RefSeq:NP_198593.1 | ProteinID:OAO90402.1 | UniProt:P25070 | PFAM:PF13499 |
| PO:PO:0000003 | PO:PO:0000013 | PO:PO:0000016 | PO:PO:0000025 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0000282 | PO:PO:0000293 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0005660 | PO:PO:0006503 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009015 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0009073 | PO:PO:0009074 | PO:PO:0009088 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 |
| ScanProsite:PS00018 | PFscan:PS50222 | PANTHER:PTHR10891 | PANTHER:PTHR10891:SF573 | SMART:SM00054 | SUPFAM:SSF47473 |
| Symbol:TCH2 | UniParc:UPI0000001414 | SEG:seg | : | : | : |
Description
CML24TCH2 [Source:UniProtKB/TrEMBL;Acc:A0A178UBB8]
Coordinates
chr5:-:14997514..14999619
Molecular Weight (calculated)
17546.9 Da
IEP (calculated)
4.550
GRAVY (calculated)
-0.409
Length
161 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSKNGVVRS CLGSMDDIKK VFQRFDKNGD GKISVDELKE VIRALSPTAS PEETVTMMKQ FDLDGNGFID LDEFVALFQI GIGGGGNNRN DVSDLKEAFE
101: LYDLDGNGRI SAKELHSVMK NLGEKCSVQD CKKMISKVDI DGDGCVNFDE FKKMMSNGGG A
101: LYDLDGNGRI SAKELHSVMK NLGEKCSVQD CKKMISKVDI DGDGCVNFDE FKKMMSNGGG A
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.