Factsheet for VIT_15s0046g00070.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
plasma membrane 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_08s0056g00290.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G46600.1	VIT_08s0056g00290.t01	AT4G20780.1	19720824

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH47865	Soybean	cytosol	72.44	73.6
KRH06431	Soybean	cytosol	72.44	73.6
Bra004524.1-P	Field mustard	cytosol	62.99	73.39
CDX80031	Canola	cytosol	62.99	73.39
Solyc10g009340.1.1	Tomato	cytosol	69.29	71.54
PGSC0003DMT400048609	Potato	cytosol	67.72	70.49
KRH68937	Soybean	cytosol	68.5	69.05
KRG97213	Soybean	cytosol	67.72	68.25
Bra000430.1-P	Field mustard	cytosol	60.63	65.25
GSMUA_Achr1P03980_001	Banana	cytosol	61.42	62.9
AT2G46600.1	Thale cress	cytosol	66.14	62.22
CDY27313	Canola	cytosol	64.57	61.65
CDY61726	Canola	cytosol	63.78	60.9
CDY13397	Canola	cytosol	63.78	60.9
Bra039271.1-P	Field mustard	cytosol	63.78	60.9
CDX83356	Canola	cytosol	61.42	58.21
TraesCS6A01G065900.1	Wheat	cytosol	56.69	57.6
TraesCS6B01G088900.1	Wheat	cytosol	56.69	57.6
TraesCSU01G118100.1	Wheat	cytosol	56.69	57.14
CDX95707	Canola	cytosol	59.84	56.72
VIT_12s0134g00240.t01	Wine grape	cytosol	48.03	52.59
VIT_19s0014g03970.t01	Wine grape	cytosol	44.09	51.85
HORVU6Hr1G011970.2	Barley	cytosol	55.12	51.47
CDY41540	Canola	cytosol	59.06	51.37
VIT_02s0012g00650.t01	Wine grape	cytosol	44.88	51.35
VIT_02s0012g00640.t01	Wine grape	cytosol	44.88	50.89
VIT_00s0347g00040.t01	Wine grape	cytosol	44.09	49.56
Os02t0122600-00	Rice	cytosol	55.12	47.62
VIT_02s0012g00660.t01	Wine grape	cytosol	43.31	45.83
Zm00001d053926_P001	Maize	cytosol	53.54	40.72
VIT_19s0014g04650.t01	Wine grape	cytosol	48.03	40.67

Protein Annotations

Gene3D:1.10.238.10	EntrezGene:100260344	wikigene:100260344	MapMan:35.1	ProteinID:CCB62560	ProteinID:CCB62560.1
InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	UniProt:F6I6G4	EMBL:FN596755	GO:GO:0003674
GO:GO:0005488	GO:GO:0005509	InterPro:IPR002048	EntrezGene:LOC100260344	wikigene:LOC100260344	PFAM:PF13833
ScanProsite:PS00018	PFscan:PS50222	PANTHER:PTHR44180	PANTHER:PTHR44180:SF7	SUPFAM:SSF47473	UniParc:UPI00015CDDDD
ArrayExpress:VIT_15s0046g00070	EnsemblPlantsGene:VIT_15s0046g00070	EnsemblPlants:VIT_15s0046g00070.t01	unigene:Vvi.22915	RefSeq:XP_002267259	RefSeq:XP_002267259.1

Description

No Description!

Coordinates

chr15:-:17143740..17144185

Molecular Weight (calculated)

13746.4 Da

IEP (calculated)

4.108

GRAVY (calculated)

-0.149

Length

127 amino acids

Sequence
(BLAST)

001: MERDGFRNGG AVFEDLLPVM AEKLDVEAFV SELCGGFRLL ADQARGLITP ESLRRSSALL GMEGMSKEDA EAMVREGDLD GDGVLNETEF CILMVRLSPG
101: MMQDAEVWLQ KALDGELRGR GSSSASS

Best Arabidopsis Sequence Match ( AT2G46600.1 )
(BLAST)

001: MEPTEKSMLL ETTSTTKMET KYEDMLPVMA EKMDVEEFVS ELCKGFSLLA DPERHLITAE SLRRNSGILG IEGMSKEDAQ GMVREGDLDG DGALNQTEFC
101: VLMVRLSPEM MEDAETWLEK ALTQELCNHN LSSMP

Arabidopsis Description

KICCalcium-binding protein KIC [Source:UniProtKB/Swiss-Prot;Acc:Q9ZPX9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.