Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d031068_P001 | |
| Zm00001d033234_P001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G54490.1 | Zm00001d031068_P001 | AT2G34650.1 | 12857841 |
| AT5G54490.1 | Zm00001d033234_P001 | AT2G34650.1 | 12857841 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG25648 | Sorghum | cytosol | 87.27 | 87.27 |
| TraesCS3B01G351500.1 | Wheat | cytosol | 77.27 | 76.58 |
| Zm00001d043258_P001 | Maize | cytosol | 63.64 | 75.27 |
| TraesCS3A01G315400.1 | Wheat | cytosol | 74.55 | 73.87 |
| TraesCS3D01G316100.1 | Wheat | cytosol | 73.64 | 72.97 |
| Os01t0783700-01 | Rice | cytosol | 70.91 | 70.27 |
| KRH55440 | Soybean | cytosol | 55.45 | 60.4 |
| HORVU3Hr1G077070.1 | Barley | cytosol | 70.0 | 58.33 |
| GSMUA_Achr7P27110_001 | Banana | cytosol | 60.91 | 57.76 |
| VIT_12s0134g00240.t01 | Wine grape | cytosol | 59.09 | 56.03 |
| GSMUA_Achr9P30020_001 | Banana | cytosol | 56.36 | 54.87 |
| KRH26016 | Soybean | cytosol | 54.55 | 54.05 |
| PGSC0003DMT400064403 | Potato | cytosol | 57.27 | 53.85 |
| GSMUA_Achr8P01460_001 | Banana | cytosol | 53.64 | 52.68 |
| VIT_02s0012g00650.t01 | Wine grape | cytosol | 52.73 | 52.25 |
| PGSC0003DMT400067274 | Potato | cytosol | 56.36 | 52.1 |
| VIT_19s0014g03970.t01 | Wine grape | cytosol | 50.91 | 51.85 |
| VIT_00s0347g00040.t01 | Wine grape | cytosol | 52.73 | 51.33 |
| Solyc07g053050.1.1 | Tomato | cytosol | 53.64 | 50.86 |
| Solyc10g006700.1.1 | Tomato | cytosol | 56.36 | 50.82 |
| PGSC0003DMT400064404 | Potato | cytosol | 56.36 | 50.82 |
| Solyc02g079720.1.1 | Tomato | cytosol | 49.09 | 50.47 |
| KRH21601 | Soybean | cytosol | 51.82 | 50.0 |
| PGSC0003DMT400036057 | Potato | cytosol | 51.82 | 49.57 |
| VIT_02s0012g00640.t01 | Wine grape | cytosol | 50.0 | 49.11 |
| KRH25447 | Soybean | cytosol | 55.45 | 48.41 |
| KRH22182 | Soybean | cytosol | 50.91 | 48.28 |
| KRH10720 | Soybean | cytosol | 50.0 | 48.25 |
| Solyc10g006660.2.1 | Tomato | cytosol | 56.36 | 48.06 |
| AT5G54490.1 | Thale cress | cytosol | 55.45 | 48.03 |
| CDY29293 | Canola | cytosol | 55.45 | 48.03 |
| KRH25972 | Soybean | cytosol | 51.82 | 47.9 |
| KRH27149 | Soybean | cytosol | 50.0 | 47.83 |
| PGSC0003DMT400049542 | Potato | cytosol | 49.09 | 47.79 |
| Solyc07g063690.1.1 | Tomato | cytosol | 49.09 | 47.79 |
| AT4G27280.1 | Thale cress | cytosol | 56.36 | 47.69 |
| KRH26856 | Soybean | cytosol | 52.73 | 47.54 |
| KRH22491 | Soybean | cytosol | 52.73 | 47.54 |
| VIT_02s0012g00660.t01 | Wine grape | cytosol | 51.82 | 47.5 |
| CDY28767 | Canola | cytosol | 56.36 | 47.33 |
| Bra022723.1-P | Field mustard | cytosol | 56.36 | 47.33 |
| Solyc03g006710.1.1 | Tomato | cytosol | 49.09 | 46.96 |
| KRH55477 | Soybean | cytosol | 50.0 | 46.22 |
| PGSC0003DMT400012996 | Potato | cytosol | 48.18 | 46.09 |
| Solyc02g079520.1.1 | Tomato | nucleus | 48.18 | 46.09 |
| PGSC0003DMT400057519 | Potato | cytosol | 48.18 | 46.09 |
| CDY48640 | Canola | cytosol | 54.55 | 45.8 |
| PGSC0003DMT400064349 | Potato | cytosol | 49.09 | 45.76 |
| KRH22173 | Soybean | cytosol | 50.0 | 44.35 |
| CDY61745 | Canola | cytosol | 52.73 | 44.27 |
| Bra002984.1-P | Field mustard | cytosol | 52.73 | 44.27 |
| CDY42456 | Canola | cytosol | 52.73 | 44.27 |
| KRH27151 | Soybean | cytosol | 49.09 | 44.26 |
| VIT_19s0014g04650.t01 | Wine grape | cytosol | 58.18 | 42.67 |
| Zm00001d014491_P001 | Maize | cytosol | 50.0 | 41.67 |
| Solyc10g006740.2.1 | Tomato | extracellular | 46.36 | 34.93 |
| Zm00001d053926_P001 | Maize | cytosol | 40.91 | 26.95 |
| CDX89262 | Canola | cytosol, peroxisome, plastid | 56.36 | 22.79 |
| Bra026364.1-P | Field mustard | cytosol | 55.45 | 20.89 |
Protein Annotations
| EnsemblPlants:Zm00001d031419_P001 | EnsemblPlants:Zm00001d031419_T001 | EnsemblPlantsGene:Zm00001d031419 | EntrezGene:103641962 | Gene3D:1.10.238.10 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005509 | InterPro:EF-hand-dom_pair | InterPro:EF_Hand_1_Ca_BS | InterPro:EF_hand_dom | InterPro:IPR002048 |
| PANTHER:PTHR44180 | PANTHER:PTHR44180:SF6 | PFAM:PF13833 | PFscan:PS50222 | ProteinID:ONM02824.1 | ScanProsite:PS00018 |
| SEG:seg | SUPFAM:SSF47473 | UniParc:UPI0002217380 | UniProt:A0A1D6KIL0 | MapMan:35.1 | : |
Description
Calcium-binding protein PBP1
Coordinates
chr1:-:189514811..189515143
Molecular Weight (calculated)
12533.4 Da
IEP (calculated)
4.077
GRAVY (calculated)
-0.163
Length
110 amino acids
Sequence
(BLAST)
(BLAST)
001: MESDKGSSVQ FQDFLPLMAR KLGVEGLIQE LCKGFQLLME PRAGKITIWS LKQSAARLGL GQLQDDELLE MMKEGDLDED GALDQMEFCI LMVRLSPDLM
101: EEEAYMMFQH
101: EEEAYMMFQH
001: MASPKSSTRP NQENQEPQFQ DFFPTMAGKL GGEGLIEEIC KGFELLMDKD KGVITFESLR RNASTVLGLG DLTDDDVRYM INEGDFDRDG ALNQMEFCVL
101: MFRLSPELME ASRCVVTEVI EEEFYRH
101: MFRLSPELME ASRCVVTEVI EEEFYRH
Arabidopsis Description
PBP1PBP1 [Source:UniProtKB/TrEMBL;Acc:A0A178URF6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.