Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G24400.1 | CDX89262 | AT4G27280.1 | 21798944 |
| AT2G24400.1 | CDY29293 | AT4G27280.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY20311 | Canola | cytosol, mitochondrion, nucleus | 98.86 | 99.43 |
| Bra032097.1-P | Field mustard | cytosol, mitochondrion, nucleus | 99.43 | 98.87 |
| AT2G24400.1 | Thale cress | cytosol, mitochondrion, nucleus | 87.5 | 86.52 |
| CDY36449 | Canola | cytosol, nucleus, plastid | 73.86 | 71.43 |
| CDY13423 | Canola | nucleus | 71.59 | 70.79 |
| CDX68733 | Canola | nucleus | 75.57 | 70.74 |
| CDY28255 | Canola | nucleus | 75.57 | 70.74 |
| CDX72302 | Canola | nucleus | 74.43 | 62.68 |
| GSMUA_Achr1P10530_001 | Banana | cytosol | 43.18 | 60.8 |
| GSMUA_Achr9P19570_001 | Banana | cytosol, plastid | 40.91 | 59.02 |
| VIT_04s0008g02800.t01 | Wine grape | plastid | 51.7 | 56.17 |
| KRH52631 | Soybean | plastid | 53.98 | 55.56 |
| KRH16185 | Soybean | nucleus | 55.68 | 55.37 |
| KRH61972 | Soybean | plastid | 52.27 | 53.8 |
| KRH04818 | Soybean | cytosol | 52.84 | 53.76 |
| GSMUA_Achr5P24150_001 | Banana | mitochondrion | 35.8 | 52.5 |
| GSMUA_Achr6P03720_001 | Banana | cytosol | 44.32 | 52.0 |
| Zm00001d002374_P001 | Maize | nucleus | 48.86 | 51.5 |
| Zm00001d026262_P001 | Maize | cytosol | 48.86 | 50.89 |
| OQU82277 | Sorghum | nucleus | 49.43 | 50.88 |
| EES06266 | Sorghum | cytosol, nucleus, plastid | 35.23 | 50.0 |
| Os04t0608300-01 | Rice | cytosol | 48.86 | 48.86 |
| TraesCS6D01G104500.1 | Wheat | cytosol | 33.52 | 47.2 |
| TraesCS7A01G418100.1 | Wheat | mitochondrion | 34.66 | 45.52 |
| Os02t0143400-00 | Rice | cytosol, mitochondrion | 33.52 | 45.38 |
| TraesCS6A01G115700.1 | Wheat | cytosol | 32.95 | 45.31 |
| TraesCS6B01G143500.1 | Wheat | cytosol | 32.95 | 45.31 |
| TraesCS2D01G428000.1 | Wheat | nucleus | 45.45 | 44.94 |
| TraesCS7D01G411100.1 | Wheat | cytosol, mitochondrion, nucleus | 34.66 | 44.85 |
| TraesCS2B01G451000.1 | Wheat | cytosol, mitochondrion, nucleus | 45.45 | 44.69 |
| TraesCS7B01G318200.1 | Wheat | cytosol, mitochondrion, nucleus | 34.66 | 44.53 |
| TraesCS2A01G430400.1 | Wheat | nucleus | 45.45 | 43.96 |
| Zm00001d053884_P001 | Maize | cytosol | 32.95 | 43.94 |
| HORVU2Hr1G100360.1 | Barley | cytosol, mitochondrion, nucleus | 44.89 | 43.65 |
| OQU76999 | Sorghum | cytosol | 34.09 | 41.38 |
| Zm00001d036463_P001 | Maize | cytosol, nucleus, plastid | 32.39 | 38.78 |
| CDY16564 | Canola | cytosol | 34.09 | 36.14 |
| CDY45067 | Canola | cytosol | 33.52 | 35.76 |
| CDX92434 | Canola | cytosol | 33.52 | 35.54 |
| CDY29803 | Canola | cytosol | 23.3 | 35.04 |
| CDY25398 | Canola | cytosol | 23.3 | 35.04 |
| CDX70944 | Canola | cytosol | 32.39 | 33.53 |
| CDX88840 | Canola | cytosol | 32.39 | 33.53 |
| CDY12336 | Canola | cytosol | 30.11 | 33.33 |
| HORVU7Hr1G096880.1 | Barley | mitochondrion | 34.09 | 31.41 |
| Os06t0701900-00 | Rice | mitochondrion | 33.52 | 30.1 |
| CDX84150 | Canola | mitochondrion | 17.61 | 23.85 |
| CDX75063 | Canola | mitochondrion | 17.61 | 23.85 |
| CDX84572 | Canola | cytosol, mitochondrion | 16.48 | 22.83 |
| CDX79664 | Canola | mitochondrion | 15.91 | 22.05 |
| CDY43741 | Canola | cytosol, mitochondrion | 14.2 | 20.33 |
| CDY43742 | Canola | mitochondrion | 14.2 | 20.33 |
Protein Annotations
| EnsemblPlants:CDY46148 | EnsemblPlantsGene:GSBRNA2T00083325001 | GO:A0A078IAD0 | GO:GO:0008150 | GO:GO:0009719 | GO:GO:0009733 |
| InterPro:SAUR_fam | ncoils:Coil | PANTHER:PTHR31374 | PANTHER:PTHR31374:SF59 | PFAM:PF02519 | ProteinID:CDY46148 |
| ProteinID:CDY46148.1 | SEG:seg | UniParc:UPI0004EEAAD2 | UniProt:A0A078IAD0 | MapMan:35.2 | : |
Description
BnaA04g14360DBnaA04g14360D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IAD0]
Coordinates
chrLK032651:-:132058..132588
Molecular Weight (calculated)
19724.6 Da
IEP (calculated)
9.751
GRAVY (calculated)
-0.691
Length
176 amino acids
Sequence
(BLAST)
(BLAST)
001: MEAKKSNKIR EIVKLQQILK KWRKQAHASK TADSKEDNNS NGGGSKGIKF LKRTLSFTDA TAVPKGYLAV SVGLEKKRYT IPTEYLSHQA FHVLLHEAEE
101: EFGFQQAGVL RIPCEVAVFE SMLKIMEDKN EGYLVTTTTA KQDCKFNKAA DDKTRYGHPS GCPPTPSHQP HSPMCR
101: EFGFQQAGVL RIPCEVAVFE SMLKIMEDKN EGYLVTTTTA KQDCKFNKAA DDKTRYGHPS GCPPTPSHQP HSPMCR
001: MEAKKSNKIR EIVKLQQLLK KWRKQAIASK AANNNNEDNN SSGGGSKSIK FLKRTLSFTD VTAVPKGYLA VSVGLEKKRY TIPTEYLSHQ AFYVLLREAE
101: EEFGFQQAGV LRIPCEVSVF ESILKIMEEK NEGYLVTPIT AKQECKFNAA ADDKTSYQHP SDCPKTPSHQ PHNSPMCR
101: EEFGFQQAGV LRIPCEVSVF ESILKIMEEK NEGYLVTPIT AKQECKFNAA ADDKTSYQHP SDCPKTPSHQ PHNSPMCR
Arabidopsis Description
At2g24400 [Source:UniProtKB/TrEMBL;Acc:Q9ZQ28]
SUBAcon: [mitochondrion,nucleus,cytosol]
SUBAcon: [mitochondrion,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.