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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 1
  • mitochondrion 2
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX89262
CDY29293

Inferred from Arabidopsis experimental PPI

Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY46148 Canola cytosol, mitochondrion, nucleus 99.43 98.86
Bra032097.1-P Field mustard cytosol, mitochondrion, nucleus 98.86 97.74
AT2G24400.1 Thale cress cytosol, mitochondrion, nucleus 87.43 85.96
CDY36449 Canola cytosol, nucleus, plastid 74.86 71.98
CDY13423 Canola nucleus 72.57 71.35
CDX68733 Canola nucleus 76.57 71.28
CDY28255 Canola nucleus 76.57 71.28
CDX72302 Canola nucleus 75.43 63.16
GSMUA_Achr1P10530_001 Banana cytosol 43.43 60.8
GSMUA_Achr9P19570_001 Banana cytosol, plastid 40.57 58.2
VIT_04s0008g02800.t01 Wine grape plastid 52.0 56.17
KRH52631 Soybean plastid 54.29 55.56
KRH16185 Soybean nucleus 56.0 55.37
KRH61972 Soybean plastid 52.57 53.8
KRH04818 Soybean cytosol 53.14 53.76
Zm00001d002374_P001 Maize nucleus 49.71 52.1
GSMUA_Achr5P24150_001 Banana mitochondrion 35.43 51.67
Zm00001d026262_P001 Maize cytosol 49.71 51.48
OQU82277 Sorghum nucleus 50.29 51.46
GSMUA_Achr6P03720_001 Banana cytosol 44.0 51.33
EES06266 Sorghum cytosol, nucleus, plastid 35.43 50.0
Os04t0608300-01 Rice cytosol 49.71 49.43
TraesCS6D01G104500.1 Wheat cytosol 33.71 47.2
TraesCS7A01G418100.1 Wheat mitochondrion 34.86 45.52
TraesCS2D01G428000.1 Wheat nucleus 46.29 45.51
Os02t0143400-00 Rice cytosol, mitochondrion 33.71 45.38
TraesCS6A01G115700.1 Wheat cytosol 33.14 45.31
TraesCS6B01G143500.1 Wheat cytosol 33.14 45.31
TraesCS2B01G451000.1 Wheat cytosol, mitochondrion, nucleus 46.29 45.25
TraesCS7D01G411100.1 Wheat cytosol, mitochondrion, nucleus 34.86 44.85
TraesCS7B01G318200.1 Wheat cytosol, mitochondrion, nucleus 34.86 44.53
TraesCS2A01G430400.1 Wheat nucleus 46.29 44.51
HORVU2Hr1G100360.1 Barley cytosol, mitochondrion, nucleus 45.71 44.2
Zm00001d053884_P001 Maize cytosol 33.14 43.94
OQU76999 Sorghum cytosol 34.29 41.38
Zm00001d036463_P001 Maize cytosol, nucleus, plastid 32.57 38.78
CDY16564 Canola cytosol 33.71 35.54
CDY45067 Canola cytosol 33.14 35.15
CDX92434 Canola cytosol 33.14 34.94
CDY25398 Canola cytosol 22.86 34.19
CDY29803 Canola cytosol 22.86 34.19
CDX70944 Canola cytosol 32.0 32.94
CDX88840 Canola cytosol 32.0 32.94
CDY12336 Canola cytosol 29.71 32.7
HORVU7Hr1G096880.1 Barley mitochondrion 34.29 31.41
Os06t0701900-00 Rice mitochondrion 33.71 30.1
CDX84150 Canola mitochondrion 17.71 23.85
CDX75063 Canola mitochondrion 17.71 23.85
CDX84572 Canola cytosol, mitochondrion 16.57 22.83
CDX79664 Canola mitochondrion 16.0 22.05
CDY43741 Canola cytosol, mitochondrion 14.29 20.33
CDY43742 Canola mitochondrion 14.29 20.33
Protein Annotations
EnsemblPlants:CDY20311EnsemblPlantsGene:GSBRNA2T00012241001GO:A0A078G4G2GO:GO:0008150GO:GO:0009719GO:GO:0009733
InterPro:SAUR_famncoils:CoilPANTHER:PTHR31374PANTHER:PTHR31374:SF59PFAM:PF02519ProteinID:CDY20311
ProteinID:CDY20311.1SEG:segUniParc:UPI0004EE8838UniProt:A0A078G4G2MapMan:35.2:
Description
BnaC04g36450DBnaC04g36450D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G4G2]
Coordinates
chrLK032105:-:518985..519512
Molecular Weight (calculated)
19595.4 Da
IEP (calculated)
9.751
GRAVY (calculated)
-0.705
Length
175 amino acids
Sequence
(BLAST)
001: MEAKKSNKIR EIVKLQQILK KWRKQAHASK TADSKEDNNS NGGGSKGIKF LKRTLSFTDA TAVPKGYLAV SVGLEKKRYT IPTEYLSHQA FHALLHEAEE
101: EFGFQQAGVL RIPCEVAVFE SMLKIMEDKN EGYLVTTTAK QDCKFNKAAD DKTRYGHPSG CPPTPSHQPH SPMCR
Best Arabidopsis Sequence Match ( AT2G24400.1 )
(BLAST)
001: MEAKKSNKIR EIVKLQQLLK KWRKQAIASK AANNNNEDNN SSGGGSKSIK FLKRTLSFTD VTAVPKGYLA VSVGLEKKRY TIPTEYLSHQ AFYVLLREAE
101: EEFGFQQAGV LRIPCEVSVF ESILKIMEEK NEGYLVTPIT AKQECKFNAA ADDKTSYQHP SDCPKTPSHQ PHNSPMCR
Arabidopsis Description
At2g24400 [Source:UniProtKB/TrEMBL;Acc:Q9ZQ28]
SUBAcon: [mitochondrion,nucleus,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.