Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 2
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT2G24400.1 | CDX89262 | AT4G27280.1 | 21798944 |
AT2G24400.1 | CDY29293 | AT4G27280.1 | 21798944 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDY46148 | Canola | cytosol, mitochondrion, nucleus | 99.43 | 98.86 |
Bra032097.1-P | Field mustard | cytosol, mitochondrion, nucleus | 98.86 | 97.74 |
AT2G24400.1 | Thale cress | cytosol, mitochondrion, nucleus | 87.43 | 85.96 |
CDY36449 | Canola | cytosol, nucleus, plastid | 74.86 | 71.98 |
CDY13423 | Canola | nucleus | 72.57 | 71.35 |
CDX68733 | Canola | nucleus | 76.57 | 71.28 |
CDY28255 | Canola | nucleus | 76.57 | 71.28 |
CDX72302 | Canola | nucleus | 75.43 | 63.16 |
GSMUA_Achr1P10530_001 | Banana | cytosol | 43.43 | 60.8 |
GSMUA_Achr9P19570_001 | Banana | cytosol, plastid | 40.57 | 58.2 |
VIT_04s0008g02800.t01 | Wine grape | plastid | 52.0 | 56.17 |
KRH52631 | Soybean | plastid | 54.29 | 55.56 |
KRH16185 | Soybean | nucleus | 56.0 | 55.37 |
KRH61972 | Soybean | plastid | 52.57 | 53.8 |
KRH04818 | Soybean | cytosol | 53.14 | 53.76 |
Zm00001d002374_P001 | Maize | nucleus | 49.71 | 52.1 |
GSMUA_Achr5P24150_001 | Banana | mitochondrion | 35.43 | 51.67 |
Zm00001d026262_P001 | Maize | cytosol | 49.71 | 51.48 |
OQU82277 | Sorghum | nucleus | 50.29 | 51.46 |
GSMUA_Achr6P03720_001 | Banana | cytosol | 44.0 | 51.33 |
EES06266 | Sorghum | cytosol, nucleus, plastid | 35.43 | 50.0 |
Os04t0608300-01 | Rice | cytosol | 49.71 | 49.43 |
TraesCS6D01G104500.1 | Wheat | cytosol | 33.71 | 47.2 |
TraesCS7A01G418100.1 | Wheat | mitochondrion | 34.86 | 45.52 |
TraesCS2D01G428000.1 | Wheat | nucleus | 46.29 | 45.51 |
Os02t0143400-00 | Rice | cytosol, mitochondrion | 33.71 | 45.38 |
TraesCS6A01G115700.1 | Wheat | cytosol | 33.14 | 45.31 |
TraesCS6B01G143500.1 | Wheat | cytosol | 33.14 | 45.31 |
TraesCS2B01G451000.1 | Wheat | cytosol, mitochondrion, nucleus | 46.29 | 45.25 |
TraesCS7D01G411100.1 | Wheat | cytosol, mitochondrion, nucleus | 34.86 | 44.85 |
TraesCS7B01G318200.1 | Wheat | cytosol, mitochondrion, nucleus | 34.86 | 44.53 |
TraesCS2A01G430400.1 | Wheat | nucleus | 46.29 | 44.51 |
HORVU2Hr1G100360.1 | Barley | cytosol, mitochondrion, nucleus | 45.71 | 44.2 |
Zm00001d053884_P001 | Maize | cytosol | 33.14 | 43.94 |
OQU76999 | Sorghum | cytosol | 34.29 | 41.38 |
Zm00001d036463_P001 | Maize | cytosol, nucleus, plastid | 32.57 | 38.78 |
CDY16564 | Canola | cytosol | 33.71 | 35.54 |
CDY45067 | Canola | cytosol | 33.14 | 35.15 |
CDX92434 | Canola | cytosol | 33.14 | 34.94 |
CDY25398 | Canola | cytosol | 22.86 | 34.19 |
CDY29803 | Canola | cytosol | 22.86 | 34.19 |
CDX70944 | Canola | cytosol | 32.0 | 32.94 |
CDX88840 | Canola | cytosol | 32.0 | 32.94 |
CDY12336 | Canola | cytosol | 29.71 | 32.7 |
HORVU7Hr1G096880.1 | Barley | mitochondrion | 34.29 | 31.41 |
Os06t0701900-00 | Rice | mitochondrion | 33.71 | 30.1 |
CDX84150 | Canola | mitochondrion | 17.71 | 23.85 |
CDX75063 | Canola | mitochondrion | 17.71 | 23.85 |
CDX84572 | Canola | cytosol, mitochondrion | 16.57 | 22.83 |
CDX79664 | Canola | mitochondrion | 16.0 | 22.05 |
CDY43741 | Canola | cytosol, mitochondrion | 14.29 | 20.33 |
CDY43742 | Canola | mitochondrion | 14.29 | 20.33 |
Protein Annotations
EnsemblPlants:CDY20311 | EnsemblPlantsGene:GSBRNA2T00012241001 | GO:A0A078G4G2 | GO:GO:0008150 | GO:GO:0009719 | GO:GO:0009733 |
InterPro:SAUR_fam | ncoils:Coil | PANTHER:PTHR31374 | PANTHER:PTHR31374:SF59 | PFAM:PF02519 | ProteinID:CDY20311 |
ProteinID:CDY20311.1 | SEG:seg | UniParc:UPI0004EE8838 | UniProt:A0A078G4G2 | MapMan:35.2 | : |
Description
BnaC04g36450DBnaC04g36450D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G4G2]
Coordinates
chrLK032105:-:518985..519512
Molecular Weight (calculated)
19595.4 Da
IEP (calculated)
9.751
GRAVY (calculated)
-0.705
Length
175 amino acids
Sequence
(BLAST)
(BLAST)
001: MEAKKSNKIR EIVKLQQILK KWRKQAHASK TADSKEDNNS NGGGSKGIKF LKRTLSFTDA TAVPKGYLAV SVGLEKKRYT IPTEYLSHQA FHALLHEAEE
101: EFGFQQAGVL RIPCEVAVFE SMLKIMEDKN EGYLVTTTAK QDCKFNKAAD DKTRYGHPSG CPPTPSHQPH SPMCR
101: EFGFQQAGVL RIPCEVAVFE SMLKIMEDKN EGYLVTTTAK QDCKFNKAAD DKTRYGHPSG CPPTPSHQPH SPMCR
001: MEAKKSNKIR EIVKLQQLLK KWRKQAIASK AANNNNEDNN SSGGGSKSIK FLKRTLSFTD VTAVPKGYLA VSVGLEKKRY TIPTEYLSHQ AFYVLLREAE
101: EEFGFQQAGV LRIPCEVSVF ESILKIMEEK NEGYLVTPIT AKQECKFNAA ADDKTSYQHP SDCPKTPSHQ PHNSPMCR
101: EEFGFQQAGV LRIPCEVSVF ESILKIMEEK NEGYLVTPIT AKQECKFNAA ADDKTSYQHP SDCPKTPSHQ PHNSPMCR
Arabidopsis Description
At2g24400 [Source:UniProtKB/TrEMBL;Acc:Q9ZQ28]
SUBAcon: [mitochondrion,nucleus,cytosol]
SUBAcon: [mitochondrion,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.