Factsheet for Bra032097.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra026364.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G24400.1	Bra026364.1-P	AT4G27280.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY46148	Canola	cytosol, mitochondrion, nucleus	98.87	99.43
CDY20311	Canola	cytosol, mitochondrion, nucleus	97.74	98.86
AT2G24400.1	Thale cress	cytosol, mitochondrion, nucleus	86.44	85.96
Bra011258.1-P	Field mustard	nucleus	74.58	70.21
Bra024013.1-P	Field mustard	nucleus	74.01	68.95
GSMUA_Achr1P10530_001	Banana	cytosol	42.37	60.0
GSMUA_Achr9P19570_001	Banana	cytosol, plastid	40.68	59.02
VIT_04s0008g02800.t01	Wine grape	plastid	50.85	55.56
KRH52631	Soybean	plastid	53.11	54.97
KRH16185	Soybean	nucleus	54.8	54.8
KRH61972	Soybean	plastid	51.41	53.22
KRH04818	Soybean	cytosol	51.98	53.18
GSMUA_Achr5P24150_001	Banana	mitochondrion	35.03	51.67
Zm00001d002374_P001	Maize	nucleus	48.59	51.5
GSMUA_Achr6P03720_001	Banana	cytosol	43.5	51.33
Zm00001d026262_P001	Maize	cytosol	48.59	50.89
OQU82277	Sorghum	nucleus	49.15	50.88
EES06266	Sorghum	cytosol, nucleus, plastid	34.46	49.19
Os04t0608300-01	Rice	cytosol	48.02	48.3
TraesCS6D01G104500.1	Wheat	cytosol	32.77	46.4
TraesCS7A01G418100.1	Wheat	mitochondrion	33.9	44.78
Os02t0143400-00	Rice	cytosol, mitochondrion	32.77	44.62
TraesCS6A01G115700.1	Wheat	cytosol	32.2	44.53
TraesCS6B01G143500.1	Wheat	cytosol	32.2	44.53
TraesCS2D01G428000.1	Wheat	nucleus	44.63	44.38
TraesCS2B01G451000.1	Wheat	cytosol, mitochondrion, nucleus	44.63	44.13
TraesCS7D01G411100.1	Wheat	cytosol, mitochondrion, nucleus	33.9	44.12
TraesCS7B01G318200.1	Wheat	cytosol, mitochondrion, nucleus	33.9	43.8
TraesCS2A01G430400.1	Wheat	nucleus	44.63	43.41
Zm00001d053884_P001	Maize	cytosol	32.2	43.18
HORVU2Hr1G100360.1	Barley	cytosol, mitochondrion, nucleus	44.07	43.09
OQU76999	Sorghum	cytosol	33.33	40.69
Zm00001d036463_P001	Maize	cytosol, nucleus, plastid	31.64	38.1
Bra020127.1-P	Field mustard	cytosol	32.77	35.15
Bra002330.1-P	Field mustard	cytosol	32.2	34.34
Bra035803.1-P	Field mustard	cytosol	22.6	34.19
Bra034954.1-P	Field mustard	cytosol	29.38	32.7
HORVU7Hr1G096880.1	Barley	mitochondrion	33.33	30.89
Os06t0701900-00	Rice	mitochondrion	32.77	29.59
Bra006576.1-P	Field mustard	cytosol	31.64	26.05
Bra005293.1-P	Field mustard	mitochondrion	17.51	23.85
Bra023055.1-P	Field mustard	cytosol, mitochondrion	16.38	22.83
Bra017255.1-P	Field mustard	mitochondrion	14.12	20.33
Bra017254.1-P	Field mustard	cytosol, mitochondrion	14.12	20.33

Protein Annotations

EnsemblPlants:Bra032097.1	EnsemblPlants:Bra032097.1-P	EnsemblPlantsGene:Bra032097	GO:GO:0008150	GO:GO:0009719	GO:GO:0009733
InterPro:SAUR_fam	PANTHER:PTHR31374	PANTHER:PTHR31374:SF59	PFAM:PF02519	SEG:seg	UniParc:UPI000254499A
UniProt:M4ETG6	MapMan:35.2	:	:	:	:

Description

AT2G24400 (E=1e-072) | auxin-responsive protein, putative / small auxin up RNA (SAUR_D)

Coordinates

chrA04:-:10923754..10924287

Molecular Weight (calculated)

19862.7 Da

IEP (calculated)

9.751

GRAVY (calculated)

-0.747

Length

177 amino acids

Sequence
(BLAST)

001: MEAKKSNKIR EIVKHQQILK KWRKQAHASK TADSKEDNNS NGGGSKGIKF LKRTLSFTDA TAVPKGYLAV SVGLEKKRYT IPTEYLSHQA FHVLLHEAEE
101: EFGFQQAGVL RIPCEVAVFE SMLKIMEDKN EGYLVTTTTA KQDCKFNKAA DDKTRYGHPS GCPPTPNSHQ PHSPMCR

Best Arabidopsis Sequence Match ( AT2G24400.1 )
(BLAST)

001: MEAKKSNKIR EIVKLQQLLK KWRKQAIASK AANNNNEDNN SSGGGSKSIK FLKRTLSFTD VTAVPKGYLA VSVGLEKKRY TIPTEYLSHQ AFYVLLREAE
101: EEFGFQQAGV LRIPCEVSVF ESILKIMEEK NEGYLVTPIT AKQECKFNAA ADDKTSYQHP SDCPKTPSHQ PHNSPMCR

Arabidopsis Description

At2g24400 [Source:UniProtKB/TrEMBL;Acc:Q9ZQ28]
SUBAcon: [mitochondrion,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.