Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d014491_P001 | |
| Zm00001d031419_P001 | |
| Zm00001d043258_P001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G24400.1 | Zm00001d014491_P001 | AT4G27280.1 | 21798944 |
| AT2G24400.1 | Zm00001d031419_P001 | AT4G27280.1 | 21798944 |
| AT2G24400.1 | Zm00001d043258_P001 | AT4G27280.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU82277 | Sorghum | nucleus | 91.62 | 89.47 |
| Zm00001d026262_P001 | Maize | cytosol | 89.22 | 88.17 |
| Os04t0608300-01 | Rice | cytosol | 77.84 | 73.86 |
| TraesCS2D01G428000.1 | Wheat | nucleus | 75.45 | 70.79 |
| TraesCS2B01G451000.1 | Wheat | cytosol, mitochondrion, nucleus | 75.45 | 70.39 |
| GSMUA_Achr4P12510_001 | Banana | cytosol | 34.13 | 70.37 |
| HORVU2Hr1G100360.1 | Barley | cytosol, mitochondrion, nucleus | 75.45 | 69.61 |
| TraesCS2A01G430400.1 | Wheat | nucleus | 75.45 | 69.23 |
| GSMUA_Achr4P05740_001 | Banana | cytosol, plastid | 62.87 | 68.63 |
| KRH46980 | Soybean | cytosol | 45.51 | 53.52 |
| VIT_04s0008g02800.t01 | Wine grape | plastid | 50.9 | 52.47 |
| VIT_09s0054g00660.t01 | Wine grape | cytosol, plastid | 53.29 | 51.45 |
| VIT_09s0054g00740.t01 | Wine grape | cytosol, plastid | 53.89 | 50.85 |
| KRH44681 | Soybean | plastid | 46.71 | 50.32 |
| Zm00001d053884_P001 | Maize | cytosol | 39.52 | 50.0 |
| KRH16185 | Soybean | nucleus | 52.69 | 49.72 |
| CDY20311 | Canola | cytosol, mitochondrion, nucleus | 52.1 | 49.71 |
| KRH04818 | Soybean | cytosol | 50.9 | 49.13 |
| CDY46148 | Canola | cytosol, mitochondrion, nucleus | 51.5 | 48.86 |
| Bra032097.1-P | Field mustard | cytosol, mitochondrion, nucleus | 51.5 | 48.59 |
| KRH52631 | Soybean | plastid | 49.7 | 48.54 |
| AT2G24400.1 | Thale cress | cytosol, mitochondrion, nucleus | 51.5 | 48.31 |
| Zm00001d036463_P001 | Maize | cytosol, nucleus, plastid | 41.32 | 46.94 |
| KRH61972 | Soybean | plastid | 47.9 | 46.78 |
| CDY36449 | Canola | cytosol, nucleus, plastid | 50.3 | 46.15 |
| CDY13423 | Canola | nucleus | 49.1 | 46.07 |
| AT4G31320.1 | Thale cress | cytosol | 52.1 | 46.03 |
| CDY28255 | Canola | nucleus | 50.9 | 45.21 |
| CDX68733 | Canola | nucleus | 50.9 | 45.21 |
| Bra011258.1-P | Field mustard | nucleus | 50.9 | 45.21 |
| Bra024013.1-P | Field mustard | nucleus | 50.3 | 44.21 |
| CDX72302 | Canola | nucleus | 50.3 | 40.19 |
| PGSC0003DMT400023703 | Potato | nucleus | 41.92 | 40.0 |
| Solyc03g124020.1.1 | Tomato | nucleus | 41.92 | 37.23 |
| Zm00001d004384_P001 | Maize | mitochondrion | 24.55 | 31.3 |
| Zm00001d014682_P001 | Maize | mitochondrion | 21.56 | 27.69 |
| Zm00001d005803_P001 | Maize | cytosol, mitochondrion, nucleus | 29.94 | 27.62 |
| Zm00001d020606_P001 | Maize | cytosol | 31.74 | 27.46 |
| Zm00001d045039_P001 | Maize | nucleus | 19.76 | 13.98 |
Protein Annotations
| EMBL:BT064669 | EnsemblPlants:Zm00001d002374_P001 | EnsemblPlants:Zm00001d002374_T001 | EnsemblPlantsGene:Zm00001d002374 | EntrezGene:100282558 | GO:GO:0008150 |
| GO:GO:0009719 | GO:GO:0009733 | InterPro:SAUR_fam | PANTHER:PTHR31374 | PANTHER:PTHR31374:SF59 | PFAM:PF02519 |
| ProteinID:ONM14104.1 | SEG:seg | UniParc:UPI000189D0A8 | UniProt:C0P8Q0 | MapMan:35.2 | : |
Description
SAUR-like auxin-responsive protein family
Coordinates
chr2:-:11368790..11369293
Molecular Weight (calculated)
18152.8 Da
IEP (calculated)
9.944
GRAVY (calculated)
-0.518
Length
167 amino acids
Sequence
(BLAST)
(BLAST)
001: MEQSGAKKSN KITEIVRMQR MLKKWRKLSV TPKEPSSPTG GGGGNAVGES KAKKFLKRTL SFTDAPPSGS PPKGHLAVCV GPAAQRFVIP TEYLKHRAFA
101: ALLREAEEEF GFQQEGVLRI PCEVPVFEST LRAVEKNKKD AAASCYCSAE YAADEVGRGT PNNPLCR
101: ALLREAEEEF GFQQEGVLRI PCEVPVFEST LRAVEKNKKD AAASCYCSAE YAADEVGRGT PNNPLCR
001: MEAKKSNKIR EIVKLQQLLK KWRKQAIASK AANNNNEDNN SSGGGSKSIK FLKRTLSFTD VTAVPKGYLA VSVGLEKKRY TIPTEYLSHQ AFYVLLREAE
101: EEFGFQQAGV LRIPCEVSVF ESILKIMEEK NEGYLVTPIT AKQECKFNAA ADDKTSYQHP SDCPKTPSHQ PHNSPMCR
101: EEFGFQQAGV LRIPCEVSVF ESILKIMEEK NEGYLVTPIT AKQECKFNAA ADDKTSYQHP SDCPKTPSHQ PHNSPMCR
Arabidopsis Description
At2g24400 [Source:UniProtKB/TrEMBL;Acc:Q9ZQ28]
SUBAcon: [mitochondrion,nucleus,cytosol]
SUBAcon: [mitochondrion,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.