Factsheet for Os06t0701900-00

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
cytosol 1
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0783700-01
Os06t0683400-02

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G24400.1	Os01t0783700-01	AT4G27280.1	21798944
AT2G24400.1	Os06t0683400-02	AT4G27280.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G418100.1	Wheat	mitochondrion	53.57	78.36
TraesCS7D01G411100.1	Wheat	cytosol, mitochondrion, nucleus	53.06	76.47
TraesCS7B01G318200.1	Wheat	cytosol, mitochondrion, nucleus	53.06	75.91
OQU76999	Sorghum	cytosol	53.06	71.72
Os02t0143400-00	Rice	cytosol, mitochondrion	45.92	69.23
Zm00001d036463_P001	Maize	cytosol, nucleus, plastid	51.53	68.71
HORVU7Hr1G096880.1	Barley	mitochondrion	61.73	63.35
KRH46980	Soybean	cytosol	30.1	41.55
Os04t0608300-01	Rice	cytosol	36.73	40.91
VIT_04s0008g02800.t01	Wine grape	plastid	33.67	40.74
VIT_09s0054g00660.t01	Wine grape	cytosol, plastid	34.18	38.73
KRH44681	Soybean	plastid	30.61	38.71
KRH16185	Soybean	nucleus	34.18	37.85
KRH04818	Soybean	cytosol	33.16	37.57
KRH52631	Soybean	plastid	32.65	37.43
VIT_09s0054g00740.t01	Wine grape	cytosol, plastid	33.67	37.29
KRH61972	Soybean	plastid	32.14	36.84
PGSC0003DMT400023703	Potato	nucleus	30.61	34.29
CDY20311	Canola	cytosol, mitochondrion, nucleus	30.1	33.71
AT2G24400.1	Thale cress	cytosol, mitochondrion, nucleus	30.61	33.71
CDY46148	Canola	cytosol, mitochondrion, nucleus	30.1	33.52
Bra032097.1-P	Field mustard	cytosol, mitochondrion, nucleus	29.59	32.77
CDY13423	Canola	nucleus	29.59	32.58
AT4G31320.1	Thale cress	cytosol	31.12	32.28
Bra024013.1-P	Field mustard	nucleus	31.12	32.11
Os02t0143300-00	Rice	mitochondrion	19.9	31.97
Solyc03g124020.1.1	Tomato	nucleus	30.61	31.91
CDY36449	Canola	cytosol, nucleus, plastid	29.59	31.87
Bra011258.1-P	Field mustard	nucleus	30.1	31.38
CDX68733	Canola	nucleus	30.1	31.38
CDY28255	Canola	nucleus	30.1	31.38
CDX72302	Canola	nucleus	32.14	30.14
Os09t0437400-00	Rice	cytosol	27.55	28.42

Protein Annotations

EnsemblPlants:Os06t0701900-00	EnsemblPlantsGene:Os06g0701900	GO:GO:0005575	GO:GO:0008150	GO:GO:0009719	GO:GO:0009733
GO:GO:0016020	GO:GO:0016021	InterPro:SAUR_fam	PANTHER:PTHR31374	PANTHER:PTHR31374:SF113	PFAM:PF02519
ProteinID:BAS99355.1	SEG:seg	UniParc:UPI0003938B3C	UniProt:A0A0P0X0Y9	MapMan:35.2	:

Description

SMALL AUXIN-UP RNA 27Similar to small auxin up RNA1. (Os06t0701900-00)

Coordinates

chr6:+:29577788..29578513

Molecular Weight (calculated)

21694.2 Da

IEP (calculated)

10.755

GRAVY (calculated)

-0.463

Length

196 amino acids

Sequence
(BLAST)

001: TNRKRSRELT RRRLTARGSK PPPSYKFSPS PPPSHLLHSI LLPTIQPTNL QLLKNTSLQS AAMEDHQGGG VGRASNKIRD IVRLQQLLKR WKKLATMAPG
101: GRSGVPKGSF AVYVGEEMRR FVIPTEYLGH WAFERLLRDA EEEFGFRHQG ALRIPCDVAA FEATLRLVAA GNGNAKAKDD AAAMCSCSSD TEILCR

Best Arabidopsis Sequence Match ( AT2G24400.1 )
(BLAST)

001: MEAKKSNKIR EIVKLQQLLK KWRKQAIASK AANNNNEDNN SSGGGSKSIK FLKRTLSFTD VTAVPKGYLA VSVGLEKKRY TIPTEYLSHQ AFYVLLREAE
101: EEFGFQQAGV LRIPCEVSVF ESILKIMEEK NEGYLVTPIT AKQECKFNAA ADDKTSYQHP SDCPKTPSHQ PHNSPMCR

Arabidopsis Description

At2g24400 [Source:UniProtKB/TrEMBL;Acc:Q9ZQ28]
SUBAcon: [mitochondrion,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.